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Bioinformatics caacaagccaaaactcgtacaaCgagatatctcttggaaaaactgctcacaatattgacgtacaaggttgttcatgaaactttcggtaAcaatcgttgacattgcgacctaatacagcccagcaagcagaat Managing.

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Presentation on theme: "Bioinformatics caacaagccaaaactcgtacaaCgagatatctcttggaaaaactgctcacaatattgacgtacaaggttgttcatgaaactttcggtaAcaatcgttgacattgcgacctaatacagcccagcaagcagaat Managing."— Presentation transcript:

1 Bioinformatics caacaagccaaaactcgtacaaCgagatatctcttggaaaaactgctcacaatattgacgtacaaggttgttcatgaaactttcggtaAcaatcgttgacattgcgacctaatacagcccagcaagcagaat Managing genomic data

2 Nov. 29, 2006HDF Workshop X, Landover MD2 DNA sequencing workflows Diverse formats Redundant data Repeated file processing In-core processing models Lack of persistence

3 Nov. 29, 2006HDF Workshop X, Landover MD3 Multiple Levels of Information Contig Summaries Discrepancies Contig Qualities Coverage Depth Read quality Aligned bases Contig Reads Percent match Trace SNP Score

4 Nov. 29, 2006HDF Workshop X, Landover MD4 HDF5 as format for bioinformatics

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