[Bejerano Aut07/08] 1 MW 11:00-12:15 in Redwood G19 Profs: Serafim Batzoglou, Gill Bejerano TA: Cory McLean.

http://cs273a.stanford.edu [Bejerano Aut07/08] 1 MW 11:00-12:15 in Redwood G19 Profs: Serafim Batzoglou, Gill Bejerano TA: Cory McLean

http://cs273a.stanford.edu [Bejerano Aut07/08] 2 Lecture 13 Insulators in the Human Genome Regulatory Potential

http://cs273a.stanford.edu [Bejerano Aut07/08] 3 Insulators: A Reminder

http://cs273a.stanford.edu [Bejerano Aut07/08] 4 CTCF [Ohlsson et al., 2001]

http://cs273a.stanford.edu [Bejerano Aut07/08] 5 The Glass Ceiling [Ohlsson et al., 2001]

http://cs273a.stanford.edu [Bejerano Aut07/08] 6 ChIP-chip reminder

http://cs273a.stanford.edu [Bejerano Aut07/08] 7 Breaking the Glass Ceiling [Kim et al., 2007]

http://cs273a.stanford.edu [Bejerano Aut07/08] 8 A known locus

http://cs273a.stanford.edu [Bejerano Aut07/08] 9 More & less interesting correlations

http://cs273a.stanford.edu [Bejerano Aut07/08] 10 Outliers

http://cs273a.stanford.edu [Bejerano Aut07/08] 11 Consensus!

http://cs273a.stanford.edu [Bejerano Aut07/08] 12 Not all are captured

http://cs273a.stanford.edu [Bejerano Aut07/08] 13 From in vitro to in silico [Xie et al., 2007]

http://cs273a.stanford.edu [Bejerano Aut07/08] 14

http://cs273a.stanford.edu [Bejerano Aut07/08] 18 Predicting Distal Elements

http://cs273a.stanford.edu [Bejerano Aut07/08] 21 ChIP-Seq

http://cs273a.stanford.edu [Bejerano Aut07/08] 23 Example: NRSF

http://cs273a.stanford.edu [Bejerano Aut07/08] 24 With original motif

http://cs273a.stanford.edu [Bejerano Aut07/08] 25 Pancreatic Islet beta cell-specification GRN

http://cs273a.stanford.edu [Bejerano Aut07/08] 26 …

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