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Installing Bioperl Perl and BioPerl are both open source projects

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Presentation on theme: "Installing Bioperl Perl and BioPerl are both open source projects"— Presentation transcript:

1 Installing Bioperl Perl and BioPerl are both open source projects
Can be obtained for free via the Internet Both work on all major platforms (Windows, Linux, Mac OSX)

2 Installing on Windows Obtain and install ActivePerl from Activestate
Open the Perl Package Manager Open a command prompt (Start->Run) Type C:\>ppm and run it Add repositories >ppm> rep add Bribes

3 Installing on Windows 4. Search for BioPerl
ppm> search Bioperl 5. This returns a numbered list of packages ppm> install <number> Where <number> is the number of the desired version

4 Installing on Linux/Unix/Mac
These platforms probably already have Perl installed Download the latest release of BioPerl Uncompress the downloaded files >gunzip bioperl-1.5.2_102.tar.gz >tar xvf bioperl-1.5.2_102.tar >cd bioperl-1.5.2_102

5 Installing on Linux/Unix/Mac
Build BioPerl >perl Build.PL >Build test This may fail some tests. A few failed tests may not affect your usage. Install BioPerl >./Build install


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