1. This Week Start Mt DNA experiment,
Start High Frequency of Recombination (HFR) experiment,
Continue Arabidopsis Developmental Screen.

2. Arabidopsis flower Model Flower System Wild-type, perianth,
calyx (4 sepals),
corolla (4 petals),
androecium,
6 stamens,
gynoecium,
2 carpels.
Model Flower System

3. Floral Transition Mutants
Inhibitory Conditions
Circadian clock mutants,
Photoreceptor mutants,
Hormone mutants,
Homeotic mutants,
Others.
mutant
wild type
Inducing Conditions

4. High Frequency of Recombination (Hfr)
...bacteria exhibiting a high frequency of recombination,
an alteration DNA sequence such that the genotype of subsequent individuals differs from the parent,
…specifically, strains with a chromosome integrated F factor that is able to mobilize and transfer part of the chromosome to the F- cell.

5. Hfr Cells ...F factor integration site,
...host (bacteria chromosome) integration site.
F factor
Bacterial Chromosome
Inserted F plasmid

6. F Pilus Attaches to F- Cell

7. Hfr DNA is Cut

8. F factor and Chromosomal DNA are Transferred

9. Recombination Requires Crossing over
Double Crossover

10. DNA not Incorporated into Chromosome are Digested

11. F factor inserts in different regions of the bacterial chromosome,
Also inserts in different orientations.

12. Origin of Replication Hfr Order of transfer strain
H thr azi ton lac pur gal his gly thi
thr thi gly his gal pur lac ton azi
lac pur gal his gly thi thr azi ton
gal pur lac ton azi thr thi gly his

13. Indicates direction of transfer.
F factor A A a A a
Hfr F-
Hfr DNA that is not incorporated in the F- strand, and DNA that has crossed out of the F- strand is digested.

14. Leading Gene: the first gene transferred is determined empirically.
F factor
A transfers first. A A
Hfr F-
A transfers last.
Hfr A F-
Leading Gene: the first gene transferred is determined empirically.

15. Hfr Order of transfer
strain
H thr azi ton lac pur gal his gly thi
thr thi gly his gal pur lac ton azi
lac pur gal his gly thi thr azi ton
gal pur lac ton azi thr thi gly his

16. E. coli Map 0 minutes is at the threonine,
100 minutes is required to transfer complete genome,

17. 1st Selection: tetR, nalR
pp. 3 assignment
due 11/15/2005
car::tn10 (0.6)
tetR
rpoB+ (90)
rifS
lac (7)
metB- (89)
car (0.6)
tetS
metB+ (89)
rpoB- (90)
rifR
cysG- (72)
cysG+ (72)
gyrA+ (48)
nalR
gyrA- (48)
nalS
1st Selection: tetR, nalR

18. Mitochondrial Control Region.
Mitochondrial DNA
16, 569 bp,
multiple copies per mt,
mt per cell,
37 genes;
22 oxidative phosphorylation,
13 tRNA,
2 rRNA,
Mitochondrial Control Region.

19. Mitochondrial Inheritance
In mammals, 99.99% of mitochondrial DNA (mtDNA) is inherited from the mother,
The sperm carries its mitochondria around a portion of its tail and has only about 100 mitochondria compared to 100,000 in the oocyte,
As the cells develop, more and more of the mtDNA from males is diluted out. 
less than one part in 104 or 0.01% of the mtDNA is paternal.

20. Mitochondrial Control Region
single promoter on each strand initiates transcription,
ori,
D-loop,
replication loop topography,
hypervariable region,
mutation rate 10x greater than genome.

21. Mitochondrial Mutation Rate
Electron leak from the ETC (1 3 %) result in the formation of superoxide.
Protection Pathway
Hydroxyl radical
production

22. Mitochondrial Control Region
Hair follicle DNA extraction,
PCR,
Sequencing (at Cold Spring Harbor),
Sequence analysis here at WWU.