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Ron Shaker, Peter Mork, Matt Barclay and Peter Tarczy-Hornoch, M.D. University of Washington, Seattle WA A Rule Driven Bi-Directional Translation System for Remapping Queries and Result Sets Between a Mediated Schema and Heterogeneous Data Sources
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Agenda Background Overview Architecture Detail Future Plans
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Introduction Growing number of online biomedical data sources Need for an easy, homogeneous way to query these data sources Goal of GeneSeek
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Background Ontology Definition
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Background Mediated Schema Definition
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Background Query Generation
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Background Data Retrieval
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Architecture Data Retrieval Process
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Forward Mapping Rules Query URL
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Forward Mapping Rules
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Reverse Mapping Rules
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Future Plans Tools for Biologists
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Summary Simplicity Specialization Division of Labor Easy to Extend
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Questions
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