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BI420 – Course information Web site: http://bioinformatics.bc.edu/~marth/BI420http://bioinformatics.bc.edu/~marth/BI420 Instructor: Gabor Marth Teaching assistant: Aaron Quinlan
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BI420 – Material Lectures (PowerPoints posted on web site) Text
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BI420 – Discovery questions http://www.aw-bc.com/geneticsplace/
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BI420 – Discovery questions Page 36, Discovery question #1.
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BI420 – Discovery questions GGGCTCAGCTGTATCAGCCACGTGCCTACAACAATCTGCCCCT
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BI420 – Discovery questions
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Genome organization and Bioinformatics Gabor T. Marth Department of Biology, Boston College marth@bc.edu BI420 – Introduction to Bioinformatics
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The animal cell
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DNA – the carrier of the genetic code
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DNA organization – chromosomes
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DNA organization – mitochondria
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Translation of genetic information
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Gene organization
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mRNA splicing – alternative splicing
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Gene expression
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Protein structure
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RNA structure
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DNA evolution
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Mechanisms of molecular evolution
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Evolution of chromosome organization
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Evolution of gene structure
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Evolution of DNA sequence
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Genetic variations
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1. The informatics of DNA sequencing DNA sequencing informatics
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2. Gene prediction, genome annotation
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3. Polymorphism discovery and analysis look at multiple sequences from the same genome region use base quality values to decide if mismatches are true polymorphisms or sequencing errors
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4. Gene/DNA expression analysis
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5. Proteomics
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6. Storage/retrieval of Biological data
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7. Sequence alignment/similarity search
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8. Phylogenetics
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9. Evolutionary Genomics
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10. Medical Genomics
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11. Practical Bioinformatics using LINUX programming in PERL
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12. Practical Bioinformatics HIT idcloneIDhspIDstartend 111117957 22196912114891 CLONE id name received masked 1NH0260K0812-25-9912-26-99 2NH0407F0212-28-9901-03-00 ALLELE id hitID nucleotide 11C 22T using and building databases
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