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Synthetic Biology at Davidson College Building Bacterial Computers
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Advantages of Biological Computers go anywhere - arctic, thermal vents, inside organisms no electricity self-replicating no immune rejection
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Two Recent Research Projects
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Flipping DNA with Hin/hixC
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14 2 53 Hamiltonian Path Problem
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14 2 53 Hamiltonian Path Solution
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Engineering Biological HPP
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Hin-mediated recombination
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Engineering Biological HPP
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Predicting Outcomes of Bacterial Computing
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Does Starting Place Matter?
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Equilibrium Does Starting Place Matter?
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How Many Plasmids Do We Need?
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Split Genes to Encode Problem
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gcat.davidson.edu/GcatWiki/index.php/Davidson_Missouri_W/Davidson_Proto cols
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Split Reporter Genes Green Fluorescent Protein Red Fluorescent Protein
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Split Reporter Genes RFP Split by hixC GFP Split by hixC
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Paper Published 7/09 15 undergraduate coauthors Paper of the year, 2009
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Can we solve the SATisfiability problem?
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Define the SATisfiability Problem
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Converting Math to Biology
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Central Dogma
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Frameshift Mutation
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Frameshift Suppression
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Suppressor tRNA
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Coding 2-SAT Clause
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Outcomes of v 1.0
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Redesign System v2.0 positive feedback loop
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Outcomes of v 2.0 - control frame shift “leak” +tRNA CGGUC +tRNA CCACU + control
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Outcomes of v 2.0 frame shift “leak” +tRNA CGGUC +tRNA CCACU + control
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Why build bacterial computers?
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Evolution of Computers 1943
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iPhone in 2011 Evolution of Computers
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E. coli in 2011 ? Living Hardware in 2021 Evolution of Bacterial Computers
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