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N ATIONAL P ARTNERSHIP FOR A DVANCED C OMPUTATIONAL I NFRASTRUCTURE Biology Workbench Workshop July 29, 2000 SDSU/LL224G Introducing the EC/CSE and building.

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Presentation on theme: "N ATIONAL P ARTNERSHIP FOR A DVANCED C OMPUTATIONAL I NFRASTRUCTURE Biology Workbench Workshop July 29, 2000 SDSU/LL224G Introducing the EC/CSE and building."— Presentation transcript:

1 N ATIONAL P ARTNERSHIP FOR A DVANCED C OMPUTATIONAL I NFRASTRUCTURE Biology Workbench Workshop July 29, 2000 SDSU/LL224G Introducing the EC/CSE and building assessment into the curriculum Kris Stewart San Diego State University NPACI/CSU Ed Center on CSE stewart@sdsu.edu www.edcenter.sdsu.edu

2 N ATIONAL P ARTNERSHIP FOR A DVANCED C OMPUTATIONAL I NFRASTRUCTURE Biology Workbench Workshop July 29, 2000 SDSU/LL224G What is Computational Science? Science Discipline Biology, Physics, Chemistry, etc. Computer Science Hardware/Software Applied Mathematics Numerical Analysis, Modeling, Simulation

3 N ATIONAL P ARTNERSHIP FOR A DVANCED C OMPUTATIONAL I NFRASTRUCTURE Biology Workbench Workshop July 29, 2000 SDSU/LL224G What is Computational Science? Science Discipline Biology, Physics, Chemistry, etc. Computer Science Hardware/Software Applied Mathematics Numerical Analysis, Modeling, Simulation Teamwork and Collaboration

4 N ATIONAL P ARTNERSHIP FOR A DVANCED C OMPUTATIONAL I NFRASTRUCTURE Biology Workbench Workshop July 29, 2000 SDSU/LL224G The mission of EOT-PACI is to develop human resources through the innovative use of emerging information technologies in order to understand and solve problems in education, science, business, government, and society. Please take a Button. http://www.eot.org/ 4 EOT PACI

5 N ATIONAL P ARTNERSHIP FOR A DVANCED C OMPUTATIONAL I NFRASTRUCTURE Biology Workbench Workshop July 29, 2000 SDSU/LL224G Education Goal: Support a national level systemic impact on CS&E education (k-12, undergrad, grad/training, informal science) www.edcenter.sdsu.edu www.shodor.org mvhs1.mbhs.edu chemviz.ncsa.uiuc.edu/ biology.ncsa.uiuc.edu www.krellinst.org whyfiles.news.wisc.edu 5

6 N ATIONAL P ARTNERSHIP FOR A DVANCED C OMPUTATIONAL I NFRASTRUCTURE Biology Workbench Workshop July 29, 2000 SDSU/LL224G Education: some remarkable projects Chickscope chickscope.beckman.uiuc.edu/chickscope.beckman.uiuc.edu/ students watch embryo maturing using magnetic resonance imaging (MRI) over the Web Chemviz chemviz.ncsa.uiuc.edu/chemviz.ncsa.uiuc.edu/ visualization tools and curriculum for computational chemistry (quantum chemistry computations, web crystallographic databases, etc.) The Why Files whyfiles.news.wisc.eduwhyfiles.news.wisc.edu explanation of science behind the news (NISE) Biology Workbench workbench.sdsc.eduworkbench.sdsc.edu collection of computational biology tools and databases Maryland Virtual High School mvhs1.mbhs.edumvhs1.mbhs.edu Core models in the K12 classroom Sociology Workbench edcenter.sdsu.eduedcenter.sdsu.edu Online tools for survey data analysis, e.g. student evaluations 6

7 N ATIONAL P ARTNERSHIP FOR A DVANCED C OMPUTATIONAL I NFRASTRUCTURE Biology Workbench Workshop July 29, 2000 SDSU/LL224G Learning Technologies Goal: Develop, apply, and assess computational tools that enhance learning trurl.npac.syr.edu/tango Java-based Web collaboratory for distributed learning www.ncsa.uiuc.edu/Cyberia/RiverWeb/ Environmental hydrology workbench, watershed mapping and modeling tools www.ncsa.uiuc.edu/EP/index.html Course broadcast over the Web 7 www-fp.mcs.anl.gov/fl/accessgrid/ ncsa.webex.com/webex/ Juna Snow will give demo

8 N ATIONAL P ARTNERSHIP FOR A DVANCED C OMPUTATIONAL I NFRASTRUCTURE Biology Workbench Workshop July 29, 2000 SDSU/LL224G Access & Inclusion Goal: Increase participation and success of women, minorities and people with disabilities in CS&E and in PACI Universal design and disability access trace.wisc.edu CDC Coalition to Diversify Computing www.npaci.edu/Outreach/CDC www.cra.org/Activities/craw GirlTECH www.crpc.rice.edu/CRPC Spend a Summer with a Scientist www.aihec.org 8

9 N ATIONAL P ARTNERSHIP FOR A DVANCED C OMPUTATIONAL I NFRASTRUCTURE Biology Workbench Workshop July 29, 2000 SDSU/LL224G Education Center on Computational Science & Engineering 9 Mission: Foster the incorporation of high performance research tools for scientific investigation into the undergraduate curriculum to better prepare learners for post-Baccalaureate activities where: Collaborative, interdisciplinary teams, Sophisticated computer tools and Effective communication among the team members and with others are used in research and problem solving.

10 N ATIONAL P ARTNERSHIP FOR A DVANCED C OMPUTATIONAL I NFRASTRUCTURE Biology Workbench Workshop July 29, 2000 SDSU/LL224G Computational Science Curricula Evaluation and Assessment 10 User-Friendly Handbook for Project Evaluation: Science, Mathematics, Engineering and Technology Education, NSF 93-152 www.ehr.nsf.gov/EHR/RED/EVAL/handbook/handbook.htm www.ehr.nsf.gov/EHR/RED/EVAL/handbook/handbook.htm Learning through Evaluation, Adaptation and Dissemination, U. Wisconsin NPACI partner “Template for a Group-Work Paradigm in an Undergraduate Supercomputing Course”, www.edcenter.sdsu.edu/projects/hpcu/kris_hpcu.pdf www.edcenter.sdsu.edu/projects/hpcu/kris_hpcu.pdf

11 N ATIONAL P ARTNERSHIP FOR A DVANCED C OMPUTATIONAL I NFRASTRUCTURE Biology Workbench Workshop July 29, 2000 SDSU/LL224G Updates for CS 575 Supercomputing Spring 2001 Based on Blue Horizon Workshop, will incorporate MPI and OpenMP into curriculum http://www.npaci.edu/enVision/v16.1/

12 N ATIONAL P ARTNERSHIP FOR A DVANCED C OMPUTATIONAL I NFRASTRUCTURE Biology Workbench Workshop July 29, 2000 SDSU/LL224G Evaluation and Assessment of Classroom Practice Student Surveys - Need a compatible tool for instructor to examine results with Sociology WorkBench (SWB) developed by team of undergraduate computer science majors employed by the EC/CSE

13 N ATIONAL P ARTNERSHIP FOR A DVANCED C OMPUTATIONAL I NFRASTRUCTURE Biology Workbench Workshop July 29, 2000 SDSU/LL224G SWB Convenient Tool to Learn from Student Survey Data Online tool for “standard public data sets” or your own data set http://edcenter.sdsu.eduhttp://edcenter.sdsu.edu Small Sample, therefore only useful as feedback for the instructor Can be used with “forms” interface directly into SWB format

14 N ATIONAL P ARTNERSHIP FOR A DVANCED C OMPUTATIONAL I NFRASTRUCTURE Biology Workbench Workshop July 29, 2000 SDSU/LL224G SWB as Analysis Tool View Student Comments (text)

15 N ATIONAL P ARTNERSHIP FOR A DVANCED C OMPUTATIONAL I NFRASTRUCTURE Biology Workbench Workshop July 29, 2000 SDSU/LL224G SWB as Analysis Tool Isolate on Specific Survey Response

16 N ATIONAL P ARTNERSHIP FOR A DVANCED C OMPUTATIONAL I NFRASTRUCTURE Biology Workbench Workshop July 29, 2000 SDSU/LL224G What do I want to Explain with SWB? Course had an initial, individual computational experiment and a group computational experiment later in the semester. More than half the students indicated they learned more in the later project. I wanted to explore the characteristics (If “A”) of those who recognized they learned more in a group.

17 N ATIONAL P ARTNERSHIP FOR A DVANCED C OMPUTATIONAL I NFRASTRUCTURE Biology Workbench Workshop July 29, 2000 SDSU/LL224G SWB as Analysis Tool Explain the Response on Learning with “enjoy groups” Don’t like it but learned more

18 N ATIONAL P ARTNERSHIP FOR A DVANCED C OMPUTATIONAL I NFRASTRUCTURE Biology Workbench Workshop July 29, 2000 SDSU/LL224G SWB as Analysis Tool Explain learning with “active participation” Not surprising

19 N ATIONAL P ARTNERSHIP FOR A DVANCED C OMPUTATIONAL I NFRASTRUCTURE Biology Workbench Workshop July 29, 2000 SDSU/LL224G Advancing the Computational Infrastructure Resources -- Today’s Digital Laboratory High-performance computing available today to the academic community Develop and Deploy Technology and application collaborations to push the capabilities of tomorrow’s digital laboratory Use and Apply Computational scientists applying enhanced capabilities to achieve new scientific results Disseminate and Incorporate Incorporating technologies into the digital laboratory and disseminating them for use in new communities

20 N ATIONAL P ARTNERSHIP FOR A DVANCED C OMPUTATIONAL I NFRASTRUCTURE Biology Workbench Workshop July 29, 2000 SDSU/LL224G NPACI Sources of Information NPACI Partnership Report enVision quarterly science magazine, especially June2000 “Why the Future May Very Well Need Us” www.npaci.edu/enVision/v16.2/director.html “Online” biweekly electronic publication, www.npaci.edu/online/ www.npaci.edu/online/ www.npaci.edu NPACI Sources of Information

21 N ATIONAL P ARTNERSHIP FOR A DVANCED C OMPUTATIONAL I NFRASTRUCTURE Biology Workbench Workshop July 29, 2000 SDSU/LL224G Subscribe to the Online Magazine and Envision Quarterly

22 N ATIONAL P ARTNERSHIP FOR A DVANCED C OMPUTATIONAL I NFRASTRUCTURE Biology Workbench Workshop July 29, 2000 SDSU/LL224G San Diego Supercomputer Ctr (SDSC) & NPACI Biological Resources Biological Data Representation and Query Research and software for analyzing structural biology data. Phil Bourne NPACI Molec. Sci. http://www.sdsc.edu/pb http://www.sdsc.edu/pb NBCR http://nbcr.sdsc.edu/ The National Biomedical Computation Resource (NBCR) makes software tools available to the biomedical communityhttp://nbcr.sdsc.edu/ Molecular Interactive Collaboration Environment http://mice.sdsc.edu http://mice.sdsc.edu

23 N ATIONAL P ARTNERSHIP FOR A DVANCED C OMPUTATIONAL I NFRASTRUCTURE Biology Workbench Workshop July 29, 2000 SDSU/LL224G What’s Next? For CSU Faculty, the Ed Center will sponsor a Computational Science Olympics competition encouraging and rewarding undergraduate projects which demonstrate “clever uses of computing” in computational science. Deadline March 2001 and we request faculty involvement and encourage of your students. For the national Computational Science community, SIAM’s CSE 2000 (Washington D.C.) and SC2000 (Dallas, TX) [Sept and Nov resp]

24 N ATIONAL P ARTNERSHIP FOR A DVANCED C OMPUTATIONAL I NFRASTRUCTURE Biology Workbench Workshop July 29, 2000 SDSU/LL224G Your thoughts? Your suggestions? Available: http://www.stewart.cs.sdsu.edu/PPT/BW_29july00_kris.ppt

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