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Importance of microRNA for seedling development in Arabidopsis thaliana Jennifer Coppersmith Department of Biochemistry and Biophysics Mentor: Dr. Hiro.

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Presentation on theme: "Importance of microRNA for seedling development in Arabidopsis thaliana Jennifer Coppersmith Department of Biochemistry and Biophysics Mentor: Dr. Hiro."— Presentation transcript:

1 Importance of microRNA for seedling development in Arabidopsis thaliana Jennifer Coppersmith Department of Biochemistry and Biophysics Mentor: Dr. Hiro Nonogaki (Horticulture)

2 Significance of Seed Development pgrc3.agr.ca/images/seeds.gif Agriculture and Food Why Arabidopsis?

3 Arabidopsis Seed Structure Embryo Endosperm Testa

4 Overview of Experiment T DNA insert SQUAMOSA PROMOTER-BINDING PROTEIN-LIKE13 (mSPL13) SPL13

5 microRNA 21-24nt in length Gene regulation at the mRNA level www.qiagen.com/about/PressReleases/images/9.jpg

6 RISC miRNA microRNA mRNA miRNA

7 RISC miRNA microRNA mutation mRNA Mutation Hypothesis: SPL13 needs to be down regulated by microRNA156 to maintain normal developmental program for germination or seedling establishment. AAAA SPL13 miR156 mSPL13

8 WT Cont mSPL13 rRNA SPL13 Overaccumulation of SPL13

9 Mutant Phenotype Cot 4 leaf seedling (normal) 2 leaf seedling (delayed) Cot

10 2-leaf seedlings4-leaf seedlings Developmental Delay

11 Temporal Seedling Arrest WT mSPL13 CONTROL

12 0 d Shoot Apical Meristem (SAM) 2 d

13 Storage Protein and Meristem Meristem Embryo Cot Hypocotyl Radical

14 WT 1 d3 d2 d4 d mSPL13 WT 3 d mSPL13 WT 2 d mSPL13 WT 4 d Meristem Development

15 mSPL13 WT 8 d Visible Difference

16 Analysis WTmSPL13 SPL13 Based on phenotype, down regulation of SPL13 via microRNA is essential for proper meristem development.

17 Determine Potential Targets of SPL13 miRNA156 SPL13 PromoterGene X X

18 Acknowledgements Hiro Nonogaki Kevin Ahern Howard Hughes Medical Institute Lab Members: Masa Asahina Tammy Chan Po-Pu Liu Jessica Kristof Piotr Pupel Jing Sun

19 SQUA SQUAMOSA ( or APETALA1) 10 bp conserved stretch 19-mer core seq - 419- 393 - 455- 429 AP1 SBP1SBP2 SPL13 ?

20 Normal Embryogenesis in mSPL13 Coppersmith JL, Hewitt JR, Nonogaki H, unpublished results


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