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Importance of microRNA for seedling development in Arabidopsis thaliana Jennifer Coppersmith Department of Biochemistry and Biophysics Mentor: Dr. Hiro Nonogaki (Horticulture)
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Significance of Seed Development pgrc3.agr.ca/images/seeds.gif Agriculture and Food Why Arabidopsis?
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Arabidopsis Seed Structure Embryo Endosperm Testa
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Overview of Experiment T DNA insert SQUAMOSA PROMOTER-BINDING PROTEIN-LIKE13 (mSPL13) SPL13
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microRNA 21-24nt in length Gene regulation at the mRNA level www.qiagen.com/about/PressReleases/images/9.jpg
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RISC miRNA microRNA mRNA miRNA
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RISC miRNA microRNA mutation mRNA Mutation Hypothesis: SPL13 needs to be down regulated by microRNA156 to maintain normal developmental program for germination or seedling establishment. AAAA SPL13 miR156 mSPL13
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WT Cont mSPL13 rRNA SPL13 Overaccumulation of SPL13
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Mutant Phenotype Cot 4 leaf seedling (normal) 2 leaf seedling (delayed) Cot
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2-leaf seedlings4-leaf seedlings Developmental Delay
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Temporal Seedling Arrest WT mSPL13 CONTROL
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0 d Shoot Apical Meristem (SAM) 2 d
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Storage Protein and Meristem Meristem Embryo Cot Hypocotyl Radical
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WT 1 d3 d2 d4 d mSPL13 WT 3 d mSPL13 WT 2 d mSPL13 WT 4 d Meristem Development
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mSPL13 WT 8 d Visible Difference
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Analysis WTmSPL13 SPL13 Based on phenotype, down regulation of SPL13 via microRNA is essential for proper meristem development.
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Determine Potential Targets of SPL13 miRNA156 SPL13 PromoterGene X X
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Acknowledgements Hiro Nonogaki Kevin Ahern Howard Hughes Medical Institute Lab Members: Masa Asahina Tammy Chan Po-Pu Liu Jessica Kristof Piotr Pupel Jing Sun
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SQUA SQUAMOSA ( or APETALA1) 10 bp conserved stretch 19-mer core seq - 419- 393 - 455- 429 AP1 SBP1SBP2 SPL13 ?
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Normal Embryogenesis in mSPL13 Coppersmith JL, Hewitt JR, Nonogaki H, unpublished results
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