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Sequence control of Aggregation Some Examples
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Domain Swapping
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Domain Swapping of RNase A Yanshun & Eisenberg (2002) Protein Sci. 6:1285-1299.
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Loop-Sheet Insertion
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Loop-sheet Insertion of 1-Antitrypsin Active (Metastable) Inactive (Stable) Loop-sheet Insert Polymer Carrell, et al. (1998) Curr. Opin. Struct. Biol. 8:799-809.
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The ubiquitous crystallins - large polydisperse complexes, molecular chaperone activity - oligomeric, two domain structure, B2 dimerizes by domain swapping - monomeric, similar domain structure as -crystallins Slingsby and Jaenicke (1999) Eye, Pt 3b: 395-402
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Human D-crystallin Fluorescence emission spectra Trp68 Trp42 Trp156 Trp130
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Equilibrium Unfolding/Refolding in GdnHCl at 37 o C Refolding Unfolding
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Folding pathway of H D-Crys
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Refolding: AFM Time Course 5 minutes 30 seconds 24 minutes54 minutes Native 300 nm 1 m
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Hydrophobic domain interface residues N-terminal domainC-terminal domain Phe56 - Phe 80%, Val 8.5%, Ile 8.5%, Leu 3% Val131 - Val 54.3%, Ile 28.5%, Leu 17.2% Ile81 - Ile 80%, Val 8.5%, Leu 5.5%, Pro 3%, Thr 3% Leu144 - Leu 68.5%, Tyr 20%, Phe 11.5% Met43 - Met 77%, Val 11.5%, Ala 8.5%, Ile 3% Val169 - Val 49%, Ile 42%, Ala 3%, Met 3%, Leu 3% Conservation among 35 -crystallin sequences: N-terminal Met43 Phe56 Ile81 C-terminal Leu144 Val131 Val169
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Equilibrium unfolding/refolding F56AV131A
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Unfold at 2.3 M GuHCl Dilute to 0.23-2.3 M GuHCl Measure Solution Turbidity at 350 nm Native control Refolded to 0.23 M GuHCl 10 g/ml protein 100 g/ml protein Refolding from intermediate
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Model for Crystallin Unfolding, Damage and Cataract Formation Within the Lens
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