Presentation is loading. Please wait.

Presentation is loading. Please wait.

Sequence control of Aggregation Some Examples. Domain Swapping.

Similar presentations


Presentation on theme: "Sequence control of Aggregation Some Examples. Domain Swapping."— Presentation transcript:

1 Sequence control of Aggregation Some Examples

2 Domain Swapping

3 Domain Swapping of RNase A Yanshun & Eisenberg (2002) Protein Sci. 6:1285-1299.

4 Loop-Sheet Insertion

5 Loop-sheet Insertion of  1-Antitrypsin Active (Metastable) Inactive (Stable) Loop-sheet Insert Polymer Carrell, et al. (1998) Curr. Opin. Struct. Biol. 8:799-809.

6 The ubiquitous crystallins  - large polydisperse complexes, molecular chaperone activity  - oligomeric, two domain structure,  B2 dimerizes by domain swapping  - monomeric, similar domain structure as  -crystallins Slingsby and Jaenicke (1999) Eye, Pt 3b: 395-402

7 Human  D-crystallin Fluorescence emission spectra Trp68 Trp42 Trp156 Trp130

8 Equilibrium Unfolding/Refolding in GdnHCl at 37 o C Refolding Unfolding

9 Folding pathway of H  D-Crys

10 Refolding: AFM Time Course 5 minutes 30 seconds 24 minutes54 minutes Native 300 nm 1  m

11 Hydrophobic domain interface residues N-terminal domainC-terminal domain Phe56 - Phe 80%, Val 8.5%, Ile 8.5%, Leu 3% Val131 - Val 54.3%, Ile 28.5%, Leu 17.2% Ile81 - Ile 80%, Val 8.5%, Leu 5.5%, Pro 3%, Thr 3% Leu144 - Leu 68.5%, Tyr 20%, Phe 11.5% Met43 - Met 77%, Val 11.5%, Ala 8.5%, Ile 3% Val169 - Val 49%, Ile 42%, Ala 3%, Met 3%, Leu 3% Conservation among 35  -crystallin sequences: N-terminal Met43 Phe56 Ile81 C-terminal Leu144 Val131 Val169

12 Equilibrium unfolding/refolding F56AV131A

13 Unfold at 2.3 M GuHCl Dilute to 0.23-2.3 M GuHCl Measure Solution Turbidity at 350 nm Native control Refolded to 0.23 M GuHCl 10  g/ml protein 100  g/ml protein Refolding from intermediate

14 Model for Crystallin Unfolding, Damage and Cataract Formation Within the Lens


Download ppt "Sequence control of Aggregation Some Examples. Domain Swapping."

Similar presentations


Ads by Google