1. CENTER FOR BIOLOGICAL SEQUENCE ANALYSIS O TECHNICAL UNIVERSITY OF DENMARK Bioinformatics & Gene Discovery http://static.howstuffworks.com/gif/cell-dna.jpg June 2007 Advanced Master’s & PhD course Course 27616

2. CENTER FOR BIOLOGICAL SEQUENCE ANALYSIS O TECHNICAL UNIVERSITY OF DENMARK Student NumberNameProject GroupBuddy Group s060047Bialy Wojciech12 s030082Helle Johansen12 s023043Jesper Freddie Sørensen12 s032001Joakim Mark Andersen23 s031796Morten Theil Rybtke23 s020283Christina Anja Guttmann23 s021854Annika Sonja Nôlsøe34 s032300Peter Lyse34 s032278Kenneth Clement Dinesen34 s022229Sarah Dahl45 s022242Dorthe Helenius Nielsen45 s053148Mervat El-Minaoui45 s032098Katrine Munch Olsen51 s060064Fhayaz Ahammad Sayyad51 s032617Allan Lind-Thomsen51

3. CENTER FOR BIOLOGICAL SEQUENCE ANALYSIS O TECHNICAL UNIVERSITY OF DENMARK Project Work and Exam Objective –Use methods and techniques introduced during lectures/exercises to make “discoveries” about a selected gene –Work on gene of own choice or choose from list of suggested genes –Prepare results as Powerpoint presentation (ca. 6-10 slides) Poster (A0 or 6-10 slides) Written 2 page summary of project

4. CENTER FOR BIOLOGICAL SEQUENCE ANALYSIS O TECHNICAL UNIVERSITY OF DENMARK Project Work and Exam Poster content –Title, names of group members and affiliations (e.g. DTU) –Description of selected methods (strengths and weaknesses), results on chosen gene, suggestions for getting more information on chosen gene Starting points –Pretend that you are given the assignment: “Find out what you can about this gene and describe ways in which we can design experiments on this gene”

5. CENTER FOR BIOLOGICAL SEQUENCE ANALYSIS O TECHNICAL UNIVERSITY OF DENMARK Project Poster Upload Name your poster presentation “Group-X.ppt” and upload before Thursday, June 21, 2 pm Upload here: –https://www.cbs.dtu.dk/PM/admin/Cours es_Conf_Wshops_Talks/00588_27616upl oadsec/ user: 27616; pw: cbs27616 –Select "Files" at top, select "file to upload" and select file on own computer Or email to: carsten@cbs.dtu.dk

6. CENTER FOR BIOLOGICAL SEQUENCE ANALYSIS O TECHNICAL UNIVERSITY OF DENMARK Project Work and Exam “Buddy-group” questions –Each group will be assigned a “buddy- group” and has to come up with one relevant question for that group during the exam/presentation –Students can discuss with their “buddy- group” during the poster party –Formulating this question is part of the course requirements

7. CENTER FOR BIOLOGICAL SEQUENCE ANALYSIS O TECHNICAL UNIVERSITY OF DENMARK Project Work and Exam Exam in class –Takes place on last day (Friday 22/6) –Students will present powerpoint presentations in classroom (with censor present) –Censor and “buddy-group” will ask a few questions

8. CENTER FOR BIOLOGICAL SEQUENCE ANALYSIS O TECHNICAL UNIVERSITY OF DENMARK Summary Course Requirements Make project poster in group Hang up poster for poster party Hand in 2-3 page written summary (e-mail to carsten@cbs.dtu.dk before Thursday 21/6 at 2 pm Prepare 1 question for buddy-group Present project orally as a group at exam (~15-20 min.)

9. CENTER FOR BIOLOGICAL SEQUENCE ANALYSIS O TECHNICAL UNIVERSITY OF DENMARK Exams - 22/6-06 (suggested) Group #TimeQuestions from Group (“Buddy Group”) 19.30-10.005 210.00-10.301 Break10.30-11.00 311.00-11.302 411.30-12.003 Break12.00-13.00 513.00-13.304 13.30-???Summary, Discussion, Evaluation