1. 3T Thalamic Segmentation

2. Data From a MPnRAGE acquisition at 3T provided by Manoj Approximate white matter null chosen for thalamic segmentation

3. Template

4. Registration to Template

5. Native

6. Registered 668

7. Registered 901

8. Registered ANON624

9. Registered ctrl_920

10. Pul VL MD AT MTT ATMDVLPul abcd Desired Segmentation

11. Creating VL for Priors Close (Dilate then Erode) with a 3x3x3 box Then subtract MTT

12. Automatic Segmentation Prior ROIs including the newly created are registered to the target – Nonlinear warp via the mean brain template Use out-of-the-box PICSL for label fusion

13. Native

14. Thalamus

16. AV (AT)

17. MD

18. Pul

19. VL

20. MTT