1. Exam notes Means are 76, 70 and ? Mean of means is Approximate grades after 3 exams

2. Screens for anti-cancer agents have identified a variety of natural and synthetic products that disrupt MT assembly or function Many drugs/treatments disassemble MTs (block assembly) –Examples with medical relevance: Vinblastine/vincristine… some leukemias… from lilly family Podophyllotoxin… warts Griseofulvin…anti-fungal Drugs/agents that stabilize MTs (promote assembly) –Taxol… ovarian cancer –from bark of Western Yew Testing the role of MTs using pharmacological agents - “inhibitors”

3. Taxol stabilizes MTs and prevents cell division

4. MTs provide a scaffold for organizing the ER and Golgi ECB 17-23 Green = MTs Red = Golgi Yel = overlap Green = MTs Red = ER Yel = overlap Centrosome ER MTs Golgi 17.3-microtubule_ER.mov

5. Disassembly of MTs with drugs fragments ER and Golgi MBoC (4) figure 16-62 Red = MTs Grn = Golgi Nocodazole Control

6. MTs are used for vesicle transport in some cells: Fast axonal transport Cell body (“soma”)Axon Nerve terminal (“synapse”) Outward (“anterograde”) transport Inward (“retrograde”) transport ECB 17-15 “+”“-” Nucleus MTs oriented with plus-ends “distal” (towards synapse)… * Microtubules Kinesin motors power “anterograde” transport (to synapse) Use ATP hydrolysis to walk towards plus-end Numerous kinesin-related proteins

7. Kinesin uses ATP hydrolysis to “walk” towards the “plus-end” of MTs Similar to myosin II, may have common evolutionary origin But movement of two heads of kinesin are coordinated, unlike myosin II The kinesin family: Motors for vesicle transport ECB 17-17 2x Light chains 2 x Heavy chains N-terminal motor domains Kinesin bind cargo Transport vesicle (vesicles not to scale) Minus- end Plus- end 17.5-kinesin.mov

8. MTs are used for vesicle transport: Fast axonal transport Cell body (“soma”)Axon Nerve terminal (“synapse”) “Anterograde” transport “Retrograde” transport See ECB figure 16-14 “+”“-” Nucleus * * * * * Microtubules MTs oriented with plus-ends “distal” (towards synapse) Kinesin powers “anterograde” transport (to synapse) Cytoplasmic dynein powers “retrograde” transport (to cell body) Uses ATP hydrolysis to walk towards minus-end

9. Cytoplasmic dynein: a minus-end motor for vesicle transport See ECB figure 16-16 (vesicles not to scale) 2x Light chains - bind cargo 2 x Heavy chains N-terminal motor domains Kinesin Minus- end Plus- end Cytoplasmic dynein 2 x heavy chains Multiple light and intermediate chains Dynactin complex Transport vesicle “Cytoplasmic” dynein uses ATP hydrolyis to walk towards MT “minus-ends” Cytoplasmic dynein, “dynactin complex” plus other proteins link MTs to transport vesicles (cargo) Axonemal dynein and cytoplasmic dynein are different, but related, motors

10. Tail of motor protein determines cargo specificity ECB 17-18 17.6-organelle_movement.mov

11. Three cytoskeletal arrays are linked to one another MicrotubulesIntermediate filamentsMicrofilaments 25 nm Linkages are via an array of binding proteins and motors END CYTOSKELETON

12. Lectures 21 and 22: The regulation and mechanics of cell division Today - cell cycle (regulation of cell division) –Cell proliferation –The eukaryotic cell cycle –Measuring the cell cycle –Models of the cell cycle: from fungi to frogs –The cell cycle is regulated by cyclin-dependent kinases Next time - mechanisms of cell division

13. A cell cycle is one round of growth and division mitosis cytokinesis Growth and division must be carefully regulated Unregulated cell growth = cancer Cells only come from pre-existing cells CLEAVA~1.AVI CLEAVA~2.AVI

14. Most cell growth occurs during “G 1 ” (6-20+ hrs; duplicate organelles, double in size) DNA replication occurs during “S- phase” (4-10+ hrs) “G 2 ” prepares cells for division (1- 6+ hrs) G 1 +S+G 2 =“Interphase” Division = “M-phase” = “mitosis” and “cytokinesis” (<1 hr) A “typical” cell cycle for animal cells is 24-48 hrs long, but varies The eukaryotic cell cycle is partitioned into four “phases” ECB 18-2 2C (unreplicated DNA, diploid chr #) 4C (DNA replicated, diploid chr #) 4C 2C 2C 4C C = amount of DNA in haploid before replication

15. Cell cycle times vary (pH~1)

16. Adapted from MBoC figures 17-5 and 17-6 DNA content (arbitrary units) 12 Number of cells Cells in G 1 Cells in G 2 /M Cells in S Can determine phase of cell cycle from DNA content Where are cells in G1, S, G2 and M on plot? Which phase has most cells in it? Lasts longest? ECB 18-2

17. Transition from one phase to another is triggered We will take a historical perspective to ‘triggers’

18. Regulating the eukaryotic cell cycle: studies in four model organisms Marine invertebrates: –Surf clam (Spisula) –Sea urchins and starfish Frog eggs and embryos: –Rana pipiens (Northern leopard frog) –Xenopus laevis (African clawed frog) Cultured cells –HeLa (Human cervical carcinoma) Yeast cell division cycle (“cdc”) mutants: –Saccharomyces cerevisiae “budding” yeast –Schizosaccharamyces pombe “fission” yeast See HWK 618-619

19. 1. Fission yeast “cell division cycle (cdc)” mutants define a master regulator (trigger) of the G 2 /M transition cdc2 - (loss of function) WEE2 = cdc2 D (gain of function) “cdc” “wee” cdc13 - (loss of function) cdc cdc25 - (loss of function) cdc wee1 - (loss of function) wee “Wild-type” fission yeastWT Mutant Phenotype cdc2 cdc25 cdc13 wee1 G2G2 M Genetic pathway Cdc2 promotes entry into mitosis

20. Nucleus Egg in “M-phase” Oocyte in “interphase” Transfer M-phase cytoplasm to interphase oocyte Oocyte “matures” (enters M-phase) ECB figure 18-5 2. Frogs: unfertilized eggs contain an M-phase Promoting Factor Transfer of cytoplasm from egg to oocyte induces M-phase: “M-phase promoting factor (MPF)” Not restricted to egg cytoplasm - Any M-phase cytoplasm will trigger M-phase ECB 18-9

21. MPF activity cycles during the cell division cycle Time MPF activity MPF peaks in M-phase Interphase M-phase Interphase Peak MPF induces M-phase ECB 18-10

22. Time MPF activity MPF peaks in M-phase 3. Surf clams and sea urchins: the abundance of “cyclin” proteins varies with the cell cycle “Cyclin” abundance varies with cell cycle: continuously synthesized, degraded at end of M- phase Cyclin B mRNA induces M-phase when injected into Xenopus oocytes Continuously label fertilized eggs with 35 S-methionine Analyze incorporation into proteins by SDS-PAGE ECB 18-6 Ribonucleotide reductase (control) Cyclin A Cyclin B Interphase M-phase Interphase Peak MPF induces M-phase Cyclin synthesisCyclin degraded

23. Cdc2 gene product is a master regulator of the G 2 -M transition cdc2 cdc25 cdc13 wee1 G2G2 M Three models of the eukaryotic cell cycle MPF regulates entry into M-phase Abundance of “cyclins” in clam eggs varies with the cell cycle Bringing it all together Cyclin B mRNA (clam) induces M- phase in frog oocytes cdc13 encodes a yeast cyclin B MPF consists of frog cdc2 homolog and cdc13 (cyclin B) homolog

24. Cell cycle control: from models to molecules Inactive (weakly active) Active M-CDK “MPF” contains two components: cdc2 gene product = catalytic subunit of protein kinase M-cyclin = cyclin B (CLB = cdc13): regulatory subunit, cyclins have no enzymatic activity M-CDK = MPF = CDK1 Remove inhibitory phosphate ECB 18-11 and 18-12 Phosphorylate M-phase substrates Histones Lamins MAPs cdc2 CLB (cdc13) cdc2 CLB (cdc13) P P cdc2 CLB (cdc13) P cdc2 CLB (cdc13) P cdc25 (inactive) wee1 P Positive feedback M-CDK (MPF) Inactive Inhibitory kinase Activating kinase M-CDK activity is also regulated by phosphorylation wee 1 is inhibitory kinase cdc25 is activating phosphatase, triggers activation of CDK1 “Switching on” M-CDK drives cell into M-phase M-cyclin

25. M-CDK triggers its own inactivation “anaphase promoting complex (APC)”; targets cyclin B for degradation Polyubiquitin Interphase APC is turned off cdc2 CLB (cdc13) P cdc2 CLB (cdc13) P APC Inactive APC Active M-cyclin degraded by proteosome Anaphase Accumulation of M-cyclin CLB (cdc13) Metaphase (mid-M) High M-cyclin M-CDK active Telophase (late-M) Low M-cyclin M-CDK inactive Prophase (early-M) Activation of CDK1 by cyclin and cdc25 M-cyclin accumulation activates M-CDK M-CDK activates APC APC inactivates M-CDK by ubiquitinating cyclin B A cytoplasmic oscillator Ubiqutin ligase

26. Review: Time M-CDK activity M-CDK peaks in M-phase Interphase M-phase Interphase Cyclin synthesisCyclin degraded Accumulation of M-cyclin above threshold activates M-CDK and promotes entry into M-phase; cyclin has no enzymatic activity Activation of APC by M-CDK promotes cyclin destruction, M-CDK inactivation, and exit from M-phase ECB 18-6

27. Multiple CDKs regulate progression through the cell cycle M G2G2 S G1G1 ECB 18-13 S-phase cyclins At least 6 different CDKs and multiple cyclins in mammals S-phase CDKs P Active S-phase CDKs Trigger M-phase S-phase cyclins degraded… P Active M-CDK M-phase cyclin degraded Trigger S-phase M-phase CDK M-phase cyclins (B) S-phase cyclins and CDKs trigger DNA replication G1-CDKs; drive cells through G1 (won’t discuss) Degradation of S- phase cyclins promotes exit from S-phase into G 2

28. S-Cdk regulates DNA replication Origin recognition complex - protein scaffolding for assembly of other proteins Cdc6 increases in G1; binds ORC and induces binding of other proteins forming pre-replicative complex Origin is ready to fire Active S-Cdk 1- phosphorylates ORC causing origin to fire = replication 2-phosphorylates Cdc6 leading to ubiquitination and degradation Cdc6 not made until next G1 - prevents origin from double firing ECB 18-14

29. Completion of critical cellular processes is monitored at cell cycle “check points” Is the cell big enough? Is the environment favorable? Is DNA undamaged? Yes? Enter S phase Is DNA undamaged? Is DNA replicated? Is cell big enough? Yes? Enter M phase Have all chromosomes attached to spindle? Yes? Proceed to anaphase Of these, the G1/S checkpoint for damaged DNA is best understood ECB 18-17 Prevents cell from triggering next phase until previous one is finished

30. RNA pol The DNA damage checkpoint: p53 induced expression of an S-phase CDK inhibitor DNA damage activates p53 Active p53 acts as a transcription factor to turn on genes, including p21 p21 protein inhibits G1/S phase CDKs, blocking entry into S-phase Cell arrests in G1 until damage repaired, or undergoes apoptosis (programmed cell death) ECB 18-15 P P p53 (inactive) P21 binds and inactivates S-phase CDK Active S-phase CDK p53 (active) TranslationTranscription p21 DNA p21 gene Mutations in p53 in half of human cancers!

31. If checkpoint is activated Or undergo apoptosis (in a minute) neurons most plant cells Exit cell cycle (temporary or permanent)

32. Zones of division and growth in plant roots Meristem - zone of active cell division Zone of cell elongation - growth but not division; Cells in G 0 Zone of differentiation - cells cease growing and terminally differentiate Regulation of each zone is not well understood in plants but involves hormones In animals: mitogens stimulate cell proliferation (block checkpoints) growth factors stimulate cell growth (stimulate biosynthesis, inhibit degradation) Arabidopsis thaliana Only a fraction of cells still actively dividing

33. Apoptosis: A tale of tadpole tails and mouse paws what do they have in common? Both processes involve “programmed cell death (apoptosis)” Tadpole tails are resorbed during metamorphosis ECB figure 18-19 Paws, hands and feet develop from “paddles” ECB figure 18-18 ECB - “programmed cell death is a commonplace, normal, and benign event. It is the inappropriate proliferation and survival of cells that presents real dangers”

34. Necrosis (cell death following injury) often results in lysis, spilling the contents into the surrounding space and causing inflammation During apoptosis (“programmed cell death”), cells remain intact and condense Corpses of apoptotic cells are often engulfed by their neighbors or specialized phagocytic cells Apoptosis is visibly distinct from necrosis ECB 18-20 18.3-apoptosis.mov

35. Apoptosis is mediated by a “caspase cascade” “Caspases” are proteases; inactive precursors activated by proteolysis Presence of suicide signals and/or withdrawal of needed survival factor activates first caspase in cascade Death protein Survival factor Inactive Activated caspases degrade nuclear and cytoplasmic proteins (lamins, cytoskeletal proteins, etc) Activated endonucleases cut chromosomal DNA Active Caspase (inactive) ECB 18-21 Initial caspase proteolytically activates downstream caspases …which activate additional caspases, and so on

36. Caspase cascade must be carefully regulated Bcl-2 family of proteins are death proteins Form pores in outer mitochondrial membrane releasing cytochrome c (respiratory chain) Cytochrome c binds adaptor and complex activates first procaspase