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November 2007BRC5 Bethesda Variation data in VectorBase Dan Lawson, VectorBase EMBL-EBI
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November 2007BRC5 Bethesda Variation database » Use Ensembl Variation database schema » Ancilliary database to ‘core’ » Perl API for programmatic access » Biomart implementation for data mining » Align reads to reference genome and call SNPs
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November 2007BRC5 Bethesda Showing SNPs in ContigView
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November 2007BRC5 Bethesda Showing SNPs in ContigView
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November 2007BRC5 Bethesda SNP Report
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November 2007BRC5 Bethesda SNP Report - SNP context
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November 2007BRC5 Bethesda TranscriptSNPview
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November 2007BRC5 Bethesda
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November 2007BRC5 Bethesda GeneSNPview
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November 2007BRC5 Bethesda Navigation through SNP pages
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November 2007BRC5 Bethesda
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November 2007BRC5 Bethesda
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November 2007BRC5 Bethesda Alignment of strain sequences
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November 2007BRC5 Bethesda Tabulated SNP details
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November 2007BRC5 Bethesda More Anopheles gambiae genomes » Sequencing of A. gambiae M & S forms complete » M form (WashU GSC) 2,754,999 reads » S form (JCVI) 2,714,217 reads » Planned sequencing for 12 genome Anopheles cluster
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November 2007BRC5 Bethesda SNP calling in A. gambiae S form » Data from Ewen Kirkness (JCVI) » 2.1 million potential SNPs
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November 2007BRC5 Bethesda Summary » (Re)-use of well established data structure » Extensive set of visualization tools » Data mining via BioMart tool » Programmatic access through Ensembl » Ability to handle re-sequencing data (including new technologies)
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