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Published byRodney Blair Modified over 9 years ago
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Carl Lagoze, Cornell University Prasenjit Mitra, William Brouwer (Penn State University) Mark Borkum (University of Southampton)
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Machine-actionable Substrate Integration of Datasets Exposure of Process
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Hubble optical observation Baltimore, MD Basic object information Strasbourg, France text 2006 Astrophysics paper X-MM-Newton X-ray observation Vilspa, Spain Chandra X-ray observation Cambridge, MA
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Identity? Description?
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Identity Description M M Mashup Reputation Relationships Conversation Groups Sharing Collaboration Actions Presence
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Triples describes aggregation Resource Map
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http://www.openarchives.org/ore/
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At-source capture of experiment data and research process (Electronic Lab Notebook) Compound object authoring Retrospective harvesting of chemistry data Representation/Reuse through common ORE data model and ontology Cloud-based triple store Chemical structure search
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Relationships: Navigate and link referenced chemistry Available soon: http://research.microsoft.com/chem4word/ Data: Semantics stored in Chemistry Markup Language Intent: Recognizes chemical dictionary and ontology terms Author/edit 1D and 2D chemistry. Change chemical layout styles. Intelligence: Verifies validity of authored chemistry
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Triple store data
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PSU NMR Spectra and Structural Data Experiment data Bibliographic metadata Citations Figures Tables Chunks Reactions Molecular Compounds Cambridge Indiana Computational Chemistry (Gaussian) triplestore Southampton
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(Nico Adams – Cambridge)
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molecules Data (capture) Semantic Graph (storage) Mash-up (reuse) text observations measurements documents data molecules data scientists datument lab notebook experiment
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success 1991 Ginsparg @ LANL high-energy physics, step-wise expansion societies hands- off, cooperative modified 1999 Director of NIH all of biomedicine societies take control failure 2000 Commercial publisher all of chemistry societies adverse PhysicsBiomedicine Chemistry arXiv eBiomed / PubMedCentral CPS
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Commercial value of chemical information (pharmaceuticals) Nature of Chemistry research culture pre-dominance of synthesis (creation) overshadows discovery mode typical of physics or biology autonomy, successful research with limited reliance on others Monopoly of scholarly societies qua publishers ACS (CAS) RSC
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Continue work on technical innovations and infrastructure Demonstrate through value-add applications Understand socio-technical barriers International workshop/study Chemistry as “canary in coal mine” Integrate with larger infrastructure effort Data Conservancy
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