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Carl Lagoze, Cornell University Prasenjit Mitra, William Brouwer (Penn State University) Mark Borkum (University of Southampton)

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Presentation on theme: "Carl Lagoze, Cornell University Prasenjit Mitra, William Brouwer (Penn State University) Mark Borkum (University of Southampton)"— Presentation transcript:

1 Carl Lagoze, Cornell University Prasenjit Mitra, William Brouwer (Penn State University) Mark Borkum (University of Southampton)

2  Machine-actionable Substrate  Integration of Datasets  Exposure of Process

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7 Hubble optical observation Baltimore, MD Basic object information Strasbourg, France text 2006 Astrophysics paper X-MM-Newton X-ray observation Vilspa, Spain Chandra X-ray observation Cambridge, MA

8 Identity? Description?

9 Identity Description M M Mashup Reputation Relationships Conversation Groups Sharing Collaboration Actions Presence

10 Triples describes aggregation Resource Map

11 http://www.openarchives.org/ore/

12 At-source capture of experiment data and research process (Electronic Lab Notebook) Compound object authoring Retrospective harvesting of chemistry data Representation/Reuse through common ORE data model and ontology Cloud-based triple store Chemical structure search

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14 Relationships: Navigate and link referenced chemistry Available soon: http://research.microsoft.com/chem4word/ Data: Semantics stored in Chemistry Markup Language Intent: Recognizes chemical dictionary and ontology terms Author/edit 1D and 2D chemistry. Change chemical layout styles. Intelligence: Verifies validity of authored chemistry

15 Triple store data

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17 PSU NMR Spectra and Structural Data Experiment data Bibliographic metadata Citations Figures Tables Chunks Reactions Molecular Compounds Cambridge Indiana Computational Chemistry (Gaussian) triplestore Southampton

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19 (Nico Adams – Cambridge)

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23 molecules Data (capture) Semantic Graph (storage) Mash-up (reuse) text observations measurements documents data molecules data scientists datument lab notebook experiment

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25 success 1991 Ginsparg @ LANL high-energy physics, step-wise expansion societies hands- off, cooperative modified 1999 Director of NIH all of biomedicine societies take control failure 2000 Commercial publisher all of chemistry societies adverse PhysicsBiomedicine Chemistry arXiv eBiomed / PubMedCentral CPS

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27  Commercial value of chemical information (pharmaceuticals)  Nature of Chemistry research culture  pre-dominance of synthesis (creation) overshadows discovery mode typical of physics or biology  autonomy, successful research with limited reliance on others  Monopoly of scholarly societies qua publishers  ACS (CAS)  RSC

28  Continue work on technical innovations and infrastructure  Demonstrate through value-add applications  Understand socio-technical barriers  International workshop/study  Chemistry as “canary in coal mine”  Integrate with larger infrastructure effort  Data Conservancy


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