1. Forensics Chapter 8

2. Central Points  DNA testing can determine identity  DNA profiles are constructed in specialized laboratories  DNA profiles used in courts  Ancestry can be determined by testing DNA  May refuse to give sample to the police

3. Case A: DNA Frightens Victim  Five years ago, Margaret was attacked and beaten  ID William in a line up by his “eyes”  William claimed innocence but was convicted and sentenced to 25 years  New DNA testing using PCR Blood on victim’s clothing not William’s He is asking to be released from prison

4. 8.1 How Is DNA Tested?  In 1975, in England  Dr. Alec Jeffreys developed DNA fingerprinting to compare DNA profiles from different individuals  Used to solve murders (see Narborough Village Murders)

5. 8.2 DNA Profile (DNA Fingerprint)  Variations in: Minisatellites (repeated sequences, 10–100 base pairs) Short tandem repeats (STRs) (2–9 base pairs) Single nucleotide polymorphisms (SNPs)  DNA variations can be used to create DNA profile and ID individuals  Used in criminal cases, paternity lawsuits, and studies of human evolution

6.  Minisatellites  Short tandem repeats (STRs)  Single nucleotide polymorphisms (SNPs) Variations in DNA...CCTGACTTAGGATTGCCA...

7. Methods to Prepare DNA Profiles Two common methods:  Restriction fragment length polymorphism (RFLP) analysis  Polymerase chain reaction (PCR)

8. RFLP Analysis  Large amount of blood or tissue Steps: 1.DNA extracted 2.Cut into fragments using restriction enzymes 3.Fragments loaded on agarose gel 4.Electrical current passed through gel, DNA fragments migrate and separating by size 5.Pattern fragments photographed and compared to others

9. p. 132 4 The gel is immersed in a liquid, and an electric current is applied across the gel from top to bottom. Stepped Art 3 The DNA is loaded onto a gel. 5 DNA fragments move through the gel and separate by size. Smaller fragments migrate furthest. 1 DNA is extracted from cells belonging to three di ff erent people. 2 Each sample is cut with a specific restriction enzyme. 6 The DNA bands are visualized on film and analyzed. Steps in RFLP

10. RFLP

11. PCR  Small amount of DNA sample Steps in one cycle: 1.DNA placed in solution 2.Heated, double-stranded DNA separates 3.Temperature lowered, primers mixed with DNA 4.Primers pair with complementary regions on DNA 5.DNA polymerase uses nucleotides to synthesize double-stranded DNA molecule

12. 2 DNA is heated and separates into single strands. p. 133 1 DNA is recovered for PCR testing. Primers 3 Primers are added and bind with complementary regions in the DNA. 4 Primers serve as starting points for new DNA. 5 New double stranded DNA is formed. a. One PCR cycle Stepped Art

13. 2 One cycle p. 133 1 Original sample 3 Two cycles b. Multiple PCR cycles 4 Three cycles Stepped Art Steps in PCR

14. Using PCR to Increase DNA

15. STR: Allele, a Unique Number of Repeats  2–9 nucleotides long  Example of three alleles: Allele 1: …AGA… Allele 2: …AGAAGAAGA… Allele 3: …AGAAGAAGAAGAAGA…  Analysis of several STR alleles show frequency of specific combinations

16. PCR for DNA Profile Steps: 1.DNA sample analyzed for STR alleles present in population members 2.Analyze population frequency, how often combinations of alleles present 3.Population frequencies for each STR allele multiplied to estimate probability

17. Combined Frequencies

18. DNA Samples (1)

19. DNA Samples (2)

20. Case A Questions  Should William get a new trial?  What are the benefits and challenges of using DNA profiles?  How reliable is DNA evidence?

21. Animation: Studying and Manipulating Genomes (DNA fingerprinting)

22. Animation: Whodunnit? A DNA fingerprint crime

23. 8.3 DNA Profiling and U.S. Courts  Landmark case: Frye v. U.S.  DNA entered U.S. court system in 1989  Approved for use in courts all over the country  Evidence may be challenged

24. How Are DNA Profiles Used?  Material from crime scene analyzed, compared to other samples or data base  Combined DNA Index System (CODIS) panel of 13 STRs for DNA profiles  ~30% of DNA profile results clear innocent people

25. DNA Profile Comparison

26. DNA Databases  Since 1998, FBI enters DNA profile from felons  More than 1,700,000 profiles  DNA databases becoming important tools in solving crimes

27. 8.4 Other Uses for DNA Profiles  Czar Nicholas II and family  Remains of military personnel killed in action  Victims of 9/11 and Katrina  Paternity identification  Trace our ancestry

28. Czar Nicholas II

29. Tracing Ancestry  Mitochondrial DNA testing Mitochondria organelle with DNA Maternal inheritance, passed from mother to children Use haplotypes to trace maternal ancestry  Y chromosome testing Y chromosome passed father to son Use haplotypes to trace paternal inheritance  Genographic Project sponsored by National Geographic Society

30. Mitochondrial Inheritance

31. Y Chromosome Inheritance

32. Case B: Samples Asked of All  Two women murdered in a small community  Males > age 17 to provide sample for DNA dragnet  Murderer was identified  What are the important issues in this request?

33. 8.5 Legal and Ethical Issues