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Published byShanna Riley Modified over 9 years ago
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Dose-Response Calculator for ArcGIS Steven E. Hanser, Cameron L. Aldridge, Matthias Leu, and Scott E. Nielsen
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What is a dose-response curve? A graph Dosage rates on the X-axis Response of interest on the Y-axis Russell et al. 1982
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Why is this helpful? Visualization tool Populations Thresholds Russell et al. 1982
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Dose-response curves in ecology Species-habitat relationships Multivariate models Explanatory tool Aldridge et al. 2008
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Converting an equation to a dose- response curve Aldridge et al. 2008 Apply the range of values for variable of interest Hold all other variables at their mean or median Persistence = -0.186 * Pop1950 - 0.038 * crop% + 0.019 * km_edge - 0.058 * sev1950 + 0.049 * sb%_30 Apply the range of values for variable of interest Hold all other variables at their mean or median Persistence = -0.186 * Pop1950 + 0.7124
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How does this apply to GIS? Spatially explicit models Prob low = 1 / (1 + (exp(-(-3.56 + 2.57 * ABIGSAGE 1km - 0.07 * TRI 270 + 0.002 * ELEV - 1.75 * WELL 1km - 2.44 * MjRD 1km - 2.12 * POWER 500 + 0.04 * Tmin + 0.25 * RIP 1km + 0.99 * MIX 3km )))) Hanser et al. in press Greater sage-grouse
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How does this apply to GIS? Spatially explicit models Large array of analysis techniques –Linear models –Multivariate statistics Mahalanobis distance –MAXENT Phillips 2005
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How do we incorporate variation? Overcome the need to use mean values for variables in the model Provide dose-response curves with confidence intervals Provide data that can inform conservation and management actions
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Dose-Response Calculator Python script tool ArcToolbox interface Dose Raster Response Raster Calculator Integer Zone Raster Zonal Statistics Tabular or Graph Output Multiplier
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Dose-Response Calculator Greater sage-grouse Dose Raster Response Raster Calculator Integer Zone Raster Zonal Statistics Tabular or Graph Output Multiplier
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Sagebrush within 1 km radius Dose-Response Calculator Dose Raster Response Raster Calculator Integer Zone Raster Zonal Statistics Tabular or Graph Output Multiplier
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Sagebrush within 1 km radius Dose-Response Calculator Dose Raster Response Raster Calculator Integer Zone Raster Zonal Statistics Tabular or Graph Output Multiplier
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Sagebrush within 1 km radius Dose-Response Calculator Dose Raster Response Raster Calculator Integer Zone Raster Zonal Statistics Tabular or Graph Output Multiplier
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Sagebrush within 1 km radius Dose-Response Calculator Dose Raster Response Raster Calculator Integer Zone Raster Zonal Statistics Tabular or Graph Output Multiplier
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Raster Calculator Dose-Response Calculator Raster Calculator –int (dose * multiplier) –Convert the dose raster into zones Dose Raster Response Raster Calculator Integer Zone Raster Zonal Statistics Tabular or Graph Output Multiplier Zonal Statistics Dose Raster Integer Zone Raster Response Raster
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Dose-Response Calculator Integer conversion 1 = original values 100 = 0-1 to 0-100% 0.001 = meters to km Dose Raster Response Raster Calculator Integer Zone Raster Zonal Statistics Tabular or Graph Output Multiplier
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Dose-Response Calculator MakeGraph .grf file Dose Raster Response Raster Calculator Integer Zone Raster Zonal Statistics Tabular or Graph Output Multiplier
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Dose-Response Calculator Output Tabular output Graph output
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Linear model example Prob low = 1 / (1 + (exp(-(-3.56 + 2.57 * ABIGSAGE 1km - 0.07 * TRI 270 + 0.002 * ELEV - 1.75 * WELL 1km - 2.44 * MjRD 1km - 2.12 * POWER 500 + 0.04 * Tmin + 0.25 * RIP 1km + 0.99 * MIX 3km )))) Hanser et al. in press Greater sage-grouse Sagebrush within 1 km radius
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Linear model example Hanser et al. in press
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Complex relationships Aldridge et al. in press Sage sparrow Sagebrush within 18 km radius Density = 1 / (1 + (exp(-(15.90 + -9.46 * ALLSAGE18km - 54.46 * NDVI18km + 48.79 * NDVI18km 2 - 86.06 * MIX5km + 1.22 * RIP1km + 0.055 * CONTAG3km + 9.18 * SALT1km - 0.08 * TRI5km + 1.52 * RDdens18km + 4.68 * WELL250 - 1.49 * GRASS3km)))) * exp(1.29 - 2.32 * ALLSAGE18km + 2.51 * NDVI18km - 11.45 * NDVI18km 2 - 19.58 * MIX5km - 3.63 * RIP1km - 0.0008 * CONTAG3km - 0.97 * SALT1km - 0.01 * TRI5km - 0.31 * RDdens18km + 1.70 * WELL250 - 0.27 * GRASS3km + 2.09)
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Complex relationships Aldridge et al. in press
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Simple comparisons
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Summary Facilitates comparisons between 2 raster datasets Incorporates variation into the dose-response curve Simple pair wise comparisons Complex linear or multivariate models
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Summary ArcToolbox interface Easy to use analysis tool Tabular and graphic output Range of applications
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Dose-response Calculator for ArcGIS http://pubs.usgs.gov/ds/631/
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