1. http://www.linkedin.com/in/snauche

2. Biological Sequences and Patents Chemical compounds and Patents Agenda Acknowledgements: FELICS is funded by the European Commission under FELICS, contract number 021902 (RII3) within the Research Infrastructure Action of the FP6 "Structuring the European Research Area" Programme. Additional funding has been provided by EMBL-EBI and the European Patent Office.

3. IQ Life sciences - Organizational Structure- DG1 Operations DG2 Operational Support DG 3 Boards of Appeal DG4 Administration DG5 Legal/Administration Affairs Patent Grant Automation IQ Life sciences International Affairs President Patent Administration  Introduction Services for Examiners Data Acquisition & Verification R&D

4. Sequence Listing Creation Research Publication Processing Biological Sequences and Patents  Biological Sequences and Patents

5. A Patent Application and its different parts SA0000001 Figures Claims Description Sequence Listing  Biological Sequences and Patents /Sequence Listing

6. Sequence Listing  Biological Sequences and Patents /Sequence Listing General Information Part Sequence(s) part

7. Standards Wipo ST25 General Information Sequence Part EMBLASN.1  Biological Sequences and Patents /Sequence Presentation Standards

8. The Submission Tool Submission Conversion Multilingual Formatting Verification  Biological Sequences and Patents /Sequence Presentation submission tool

9. The Submission Tool  Biological Sequences and Patents /Sequence Presentation submission tool

10. Sequence Listing Creation Research Publication Processing Biological Sequences and Patents

11. Front End Sequence Listing files (ST25) Online filing Paper Filing and Sequence Listing on Electronic carrier Storage of all incoming sequence listing files including versions (Legal version) Sequence Listing version comparison (Trimaran, etc.) Legal Publication server Date Stamp Verification Formatting "Scientific" Publication server Search Environment Business rules "Non redundant" Patent Sequence Database Process Relational Database Relational Database Verified Sequences Sequence Listings from National Patent Offices Text & Forms OCR Sequence Listing Verification process  Biological Sequences and Patents /Sequence Listing Value Chain @ EPO

12. Sequence Listing Verification process Sequence Listing Creation Research Publication Processing

13. Data Publication: International Cooperation The Trilateral patent offices exchange and publish biological sequence data in collaboration with the Public Database Providers USPTO JPO KIPO EPO  Biological Sequences and Patents / Published sequences exchange

14. Non Redundant Patent Sequence Database / Project Overview  Biological Sequences and Patents / Non redundant Patent Sequence Database

15. Non Redundant Patent Sequence Database / Sequence Capture  Biological Sequences and Patents / Non redundant Patent Sequence Database Sequence Detection Algorithm: Detects the presense of sequences in all incoming EPO applications, using multipass scanning through different detection levels Data Management Pipelines: Enrichment of database coverage avoiding redundancy

16.  Biological Sequences and Patents / Non redundant Patent Sequence Database 2 types of NR databases Database record (L2) Search and Public availability @ EBI PN corrections Non Redundant Patent Sequence Database / Publicly available

17. Chemical compounds and Patents Biological Sequences and Patents Extraction of Chemical names in Patents

18. Parsing chemicals ► Chemical Structures ► IUPAC name ►Link to Patent numbers systematic names trivial names formulae acronyms fragments OSCAR Extraction of Chemical names in Patents  Biological Sequences and Patents / Extraction of chemical names from patents

19. Chemical Information from Patents  Biological Sequences and Patents / Availability of chemicals from patents

20. Availability of Patent related Data @ EBI  Biological and Chemical Information from Patents

21. Acknowledgements: FELICS is funded by the European Commission under FELICS, contract number 021902 (RII3) within the Research Infrastructure Action of the FP6 "Structuring the European Research Area" Programme. Additional funding has been provided by EMBL-EBI and the European Patent Office.