1. Automated analysis of cytometric profiles of synovial fluid and peripheral blood in rheumatoid arthritis Till Sörensen 1, Ursula Schulte-Wrede 2, Silvia Pade 1, Heike Hirseland 2, Gerd Burmester 1, Andreas Radbruch 2, Andreas Grützkau 2, Thomas Häupl 1 1 Department of Rheumatology and Clinical Immunology, Charité, 2 German Arthritis Research Center (DRFZ), Berlin, Germany. Till Sörensen, Dipl.-Math. Department of Rheumatology and Clinical Immunology Bioinformatics Group Charité University Hospital Charitéplatz 1 D-10117 Berlin Germany Contact: Flow cytometry (FCM) is widely used in clinical research and offers rapid and quantitative characterization at single cell level. Traditional analysis is a semiautomated, time-consuming process of gating and successive 2-D projections, influenced by investigator-specific settings. With an increasing number of parameters for multiplexing, the manual analysis step is most limiting and impedes high throughput analysis in FCM. Therefore, we developed a new algorithm for automated and standardized analysis of multiplex FCM data. Automated Cell-Grouping Meta-Clustering of Cell-Groups Comparison with manual Analysis Comparison of Rheumatoid Arthritis versus Normal Donors - cell-clusters of several experiments are grouped according to their position and extension in multi-dimensional parameter space - meta-populations defined according to distance levels Whole blood leukocytes stained simultaneously with up to 7 markers were correctly distinguished in all major populations including granulocytes (CD15+), T-cells and their subpopulations (CD3+, CD4+, CD8+), monocytes (CD14+), B- cells (CD19+), and NK-cells (CD56+). The result was comparable to the “gold standard” of manual evaluation by an expert. The new technology is able to detect sub-clusters and to characterize so far neglected smaller populations based on the new parameters generated. Automated clustering did not require fluorescence compensation of data. Cell-grouping is applicable even for large FCM datasets of at least 10 parameters and more than 1 million events. Comparing the cell-clusters between RA and healthy controls, differences were Our approach reveals first promising results for the analysis of large datasets as generated by multiplex FCM analysis in an automated and time-saving way. Defined clustering algorithms avoid operator-induced bias. In addition, our unsupervised procedure is able to detect unexpected sub-clusters and to characterize so far neglected smaller populations, which may help not only to distinguish normal from disease but also to develop markers for disease activity and therapeutic stratification. Background and Objectives Conclusions - good accordance of cell number in experiments of magnetic depleted populations with manual analysis -t-test of relative cell-frequencies in meta-populations (related to 5 meta- population levels) leads to 250 out of 609 significant meta-populations with p-value < 0.1 Figure 3: major cell-populations in meta-cluster tree (left) meta-populations defined in 5 distance levels (right) Figure 1:cell-grouping overview of uncompensated data (left) cells of two clusters in intermediate iteration (right top) small cell populations detected individually (right bottom) Figure 2:comparison between automated clustering and manual gating of populations characterised by FCS, SSC and CD3 Figure 4: significant B-cell meta-populations back-gated (left) classical clustering of significant changes in Rheumatoid Arthritis (blue) and Normal (gray) Donors (right) parameter all cell groups of all experiments CD4+ CD4- CD19+ CD15+ CD14+ significant meta-populations experiments For grouping of cells, an unbiased unsupervised model based t-mixture approach with Expectation Maximization (EM)-iteration was applied. Populations were detected and identified by meta-clustering of several experiments according to position and extension of cell-clusters in multi- dimensional space including a normalization step by General Procrustes Analysis (GPA). For validation, peripheral leukocytes from healthy donors and patients with rheumatoid arthritis (RA) were prepared by hypo-osmotic erythrocyte lysis and stained with different sets of lineage-specific antibodies, including CD3, CD4, CD8, CD56, CD19, CD14 and CD15. In parallel, different leukocyte samples were depleted of one of these populations by magnetic beads. Qualitative and quantitative characteristics of major populations were compared with conventional manual analysis. Materials and Methods - unsupervised cluster algorithm based on Expectation Maximization (EM)- iteration with t-mixture model -complete multi-dimensional approach does not require compensation -sensitive detection of small cell groups beside large cell groups Illustration of Analysis Results Acknowledgement: BTCure IMI grant agreement no. 115142 ArthroMark grant no 01EC1009A 89 events145 events >42.000 >28.000 detectable in several cell (sub-)populations, stable enough to perform correct classification into controls and disease. Automation included asinh-transformation of data, cell grouping, population detection and population feature extraction. FITC: CD27 PE-Cy5-A: CD45RA RA (0.40) ND (0.15) CD45RA- T-cells found in two independent measurements Level 1 Level 2 Level 3 Level 4 Level 5 phone: +49 30 450 513296 fax:+49 30 450 513957 e-mail:till-antoni.soerensen@charite.de