1. Integrating Imhotep with existing Software and Hardware at NMGRL Jake Ross Bremen, Germany 3/29/11 New Mexico Geochronology Research Laboratory New Mexico Tech jirhiker@nmt.edu

2. Components Prep System Mass Spectrometer Database Data Processing Software DAQ Software Prep System Software Mass Spec. Software

3. Model 1 Prep System Mass Spectrometer Database Data Processing Routines DAQ Routines Prep System Routines Mass Spec. Routines Al Deino’s Mass Spec Software Computer

4. Model 1 Prep System Mass Spectrometer Database Data Processing Routines DAQ Routines Prep System Routines Mass Spec. Routines Imhotep CSV Software Computer

5. Model 2 Prep System Mass Spectrometer DAQ Routines Prep System Routines Mass Spec. Routines Imhotep CSV Database or filesystem Data Processing Routines Software Computer

6. Model 3 Prep System Mass Spectrometer Data Processing Routines DAQ Routines Prep System Routines Mass Spec. Routines Hardware specific DAQ Routines Manager Worker Manager Mass SpecImhotep Pychron MySQL Database Software Computer

7. MySQL Model 3 Prep System Mass Spectrometer Database Data Processing Routines DAQ Routines Prep System Routines Mass Spec. Routines Hardware specific DAQ Routines Manager Worker Mass SpecImhotep Pychron Software Computer

8. Pychron-Imhotep Interface Pychron RemoteHardware Server Hardware Panel –Switch Panel Item DIO –Associated C# script

9. Pychron Python (EPD) Enthought Tool Suite Rapid prototyping Framework Flexible, extensible and configurable Hardware Control –USB, RS232/485, LAN (TCP or UDP) Full featured Photon Machines interface

10. Photon Machines Fusions

11. RemoteHardwareServer TCP/UDP server –Python Standard Library (SocketServer) Minimal GUI

12. Hardware Panel

13. SwitchDIOHardwareScript

15. Valve Protocol 1.Hardware Panel Switch SetParameter() 2.Imhotep hardware script Open [Valve Name] 3.RemoteHardwareServer Repeat command to Pychron 4.Pychron Parse command and act OPEN A ==> Rout:301 OPEN 5.Aglient or arduino valve actuator Actuate valve Return status Imhotep RHS Pychron Device TCP IPC USB RS-485 RS-232

16. Mac Mini LAN Imhotep Valve AValve B RemoteHardwareServer Pychron TCPServer Hardware Agilent/Arduino GP act. Prep System Dell Mac Pro Mass Spectrometer Hardware Electronics IPC Mass Spec CO2UVDiode

17. Mac Mini LAN Imhotep Valve AValve B RemoteHardwareServer Pychron TCPServer Hardware Agilent/Arduino GP act. Prep System Dell Mac Pro Mass Spectrometer Hardware Electronics IPC Mass Spec CO2UVDiode

18. Unix Socket, TCP and RS232 N trials = 500 Min = 18.8 ms Mean = 21.45 ms std =3.41 Max = 39.68 ms 19200 baud Time (ms) frequency

19. Jake Ross New Mexico Tech / NMGRL http://code.google.com/p/arlab/ API (out of date) http://nmt.edu/~jirhiker/ jirhiker@gmail.com or jirhiker@nmt.edu

20. MDD Plugin

21. Mac Mini LAN Imhotep Valve AValve B RemoteHardwareServer Pychron TCPServer Hardware Agilent/Arduino GP act. Prep System Dell Mac Pro Mass Spectrometer Hardware Electronics IPC Mass Spec CO2UVDiode

22. N trials = 1000 Min = 2.54 ms Mean = 2.97 ms std =0.597 Max = 14.35 ms Time (ms) frequency RHSPychron Unix Socket

23. Mac Mini LAN Imhotep Valve AValve B RemoteHardwareServer Pychron TCPServer Hardware Agilent/Arduino GP act. Prep System Dell Mac Pro Mass Spectrometer Hardware Electronics IPC Mass Spec CO2UVDiode

24. N trials = 500 Min = 2.14 ms Mean = 3.80 ms std =2.18 Max = 24.70 ms Time (ms) frequency RHSPychronClient TCP Unix Socket and TCP LAN UNIX

25. Unix and TCP no logging N trials = 1000 Min = 1.96 ms Mean = 2.69 ms std = 0.48 Max = 5.46 ms Time (ms) frequency

26. N trials = 1000 Min = 0.11 ms Mean = 0.37 ms std = 0.67 Max = 10.13 ms Shared Memory IPC Time (ms) frequency

27. N trials = 1000 Min = 3.77 ms Mean = 6.27 ms std =3.15 Max = 35.96 ms Time (ms) frequency RHSPychronClient localhost Unix Socket and TCP