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Supplemental Figure S1. Heat map of metabolite data. The plots were applied for the 131 metabolites.

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Presentation on theme: "Supplemental Figure S1. Heat map of metabolite data. The plots were applied for the 131 metabolites."— Presentation transcript:

1 Supplemental Figure S1. Heat map of metabolite data. The plots were applied for the 131 metabolites.

2 A)B) C)D)E) F) Supplemental Figure S2. Changes of composition of metabolite classes in cells of Allochromatium vinosum wild type and ΔdsrJ mutant strain grown 24 h on elemental sulfur (50 mM) and 8 h on sulfide (4 mM), thiosulfate (10 mM) and malate (22 mM), respectively (A-E). Relative abundance of metabolite classes was determined by the sum of all observed protein normalized responses per metabolite class (see also Table S1) Changes of standard amino acid concentrations is outlined separately (F).

3 D11620 D260482 D278931 A125001-101 A141003-101 A142003-101 A143003-101 A145005-101 A145008-101 A184003-101 A184005-101 A203004-101 A214003-101 A214004-101 A218001-101 A254009-101 A112003-101 A157003-101 A166004-101 A190021-101 A255002-101 A277004-101 NA145015 NA211001 Unknown#bth-pae-008 Unknown#bth-pae-013 Unknown#bth-pae-024 Unknown#bth-pae-028 Unknown#bth-pae-039 Unknown#sst-cgl-046 MSTs (A) WT S 2-,S 2 O 3 2-,S 0 /WT Malate D11620 D260482 D278931 A125001-101 A141003-101 A142003-101 A143003-101 A145005-101 A145008-101 A184003-101 A184005-101 A203004-101 A214003-101 A214004-101 A218001-101 A254009-101 A112003-101 A157003-101 A166004-101 A190021-101 A255002-101 A277004-101 NA145015 NA211001 Unknown#bth-pae-008 Unknown#bth-pae-013 Unknown#bth-pae-024 Unknown#bth-pae-028 Unknown#bth-pae-039 Unknown#sst-cgl-046 (D) ΔdsrJ/WT MSTs D11620 D260482 D278931 A125001-101 A141003-101 A142003-101 A143003-101 A145005-101 A145008-101 A184003-101 A184005-101 A203004-101 A214003-101 A214004-101 A218001-101 A254009-101 A112003-101 A157003-101 A166004-101 A190021-101 A255002-101 A277004-101 NA145015 NA211001 Unknown#bth-pae-008 Unknown#bth-pae-013 Unknown#bth-pae-024 Unknown#bth-pae-028 Unknown#bth-pae-039 Unknown#sst-cgl-046 MSTs (C) WT S 2 O 3 2- /WT S 0 WT S 2 O 3 2- /WT S 0 decrease increase no change no measurement > 1.5> 2> 10 < 0.66< 0.5< 0.1 ΔdsrJ/WT Growth on sulfide decrease increase no change no measurement > 1.5> 2> 10 < 0.66< 0.5< 0.1 D11620 D260482 D278931 A125001-101 A141003-101 A142003-101 A143003-101 A145005-101 A145008-101 A184003-101 A184005-101 A203004-101 A214003-101 A214004-101 A218001-101 A254009-101 A112003-101 A157003-101 A166004-101 A190021-101 A255002-101 A277004-101 NA145015 NA211001 Unknown#bth-pae-008 Unknown#bth-pae-013 Unknown#bth-pae-024 Unknown#bth-pae-028 Unknown#bth-pae-039 Unknown#sst-cgl-046 MSTs decrease increase no change no measurement > 1.5> 2> 10 < 0.66< 0.5< 0.1 123 1: S 2- /malate 2: S 2 O 3 2- /malate 3: S 0 /malate (B) WT S 2- /WT S 2 O 3 2-, S 0 decrease increase no change no measurement > 1.5> 2> 10 < 0.66< 0.5< 0.1 12 1: S 2- / S 2 O 3 2- 2: S 2- /S 0 Supplemental Figure S3. Changes in Mass spectral tags (MSTs). The MST concept allows handling and referencing of yet unidentified metabolic components from GC-MS profiling experiments. MST collections allow later identification using pure authentic reference substances (Kopka, 2006).

4 decreaseno change < 0.66< 0.5< 0.1 12 Sulfite UN Thiosulfate Thiols Phosphate Sulfate Nitrate Chloride Potassium Ammonium Sodium CationAnion 1: S 2- / S 2 O 3 2- 2: S 2- /S 0 Pyrophosphate (PPi) Phosphoric acid Malic acid, 2-methylester Phosphoric acid monomethyl ester N-Acetyl-serine Boric-acid Adipic acid Benzoic acid Furan-2-carboxylic acid Sorbitol Xylitol Mannose Ribose Xylose Methyl- α- D- Glucopyranoside β- 1,6-anhydro- Glucose Gluconic acid- 1,5-lactone Glycerol-3- phosphate Glycerol Fumarate 2-Oxo-glutaric acid Succinate Malate cis-Aconitate Isocitrate Succinyl-CoA Oxaloacetate Citrate TCA cycle GlucoseGluconic acid Major CHO Metabolism Sucrose Fructose Glycogen/Starch G1P G6P Trehalose, alpha, alpha’- Inositol- phosphate Inositol-myo Valine Leucine Alanine Asparagine Methionine Lysine Asparatic acid Homoserine Uracil ThreonineIsoleucine PutrescineAgmatine Arginine Ornithine Citruline Arginine- succinate Proline Glutamine Histidine Pyroglutamic acid Octadecanoic acid Tetradecanoic acid Fatty acid biosynthesis Dodecanoic acid Hexanoic acid Tyrosine 4-Hydroxy- phenylpyruvate Tryptophan PhenylpyruvateChorismateShikimic acid Cysteine O-Acetyl- serine Serine Glyceric acid Ethanolamine UDP-Glucose M6P DHAP 3-PGA PEP F6P Amino acid biosynthesis Amines and Polyamines Urea cycle gECGSH GSH biosynthesis Pyruvic acid Hexadecanoic acid Malonate HomoCysO-Succinyl- homoserine Lactic acid Glycine F1,6BP Acetyl-CoA Glycolic acid Glutamic acid 2-Oxo- isocaproic acid 2-Isopropyl- malic acid 2-Methyl- malic acid 4-amino- Butyric acid 2-PGA HS - Phenylalanine Butylamine Cadaverine n-Propylamine 2-ethyl-Hexanoic acid Eicosanoic acid Nonanoic acid Heptadecanoic acid GSSG ? ? ? Hydroxy- pyruvic acid Serine Glycine Glyoxylic acid THF Methylene- THF CO 2 NH 4 + Amino acid Keto acid C2 cycle Ru-1,5-bisP 2-P- Glycolic acid Calvin- cycle ? ? ? ? increaseno measurement > 1.5> 2> 10 S-Adenosyl- methionine S-Adenosyl- homocysteine Supplemental Figure S4. Metabolite changes between sulfide, thiosulfate and sulfur growth conditions. Adenine Guanine Uridine Thymine Xanthine Inosine Pyridine, 2-hydroxy- Pyridine, 3-hydroxy- AMP Orotic acid Nucleobases/Nucleotides

5 Pyrophosphate (PPi) Phosphoric acid Malic acid, 2-methylester Boric-acid Adipic acid Benzoic acid Furan-2-carboxylic acid Phosphoric acid monomethyl etser WT S 2 O 3 2- /WT S 0 decrease increase no change no measurement > 1.5> 2> 10 < 0.66< 0.5< 0.1 Sulfite UN Thiosulfate Thiols Phosphate Sulfate Nitrate Chloride Potassium Ammonium Sodium CationAnion Fumarate 2-Oxo-glutaric acid Succinate Malate cis-Aconitate Isocitrate Succinyl-CoA Oxaloacetate Citrate TCA cycle GlucoseGluconic acid Major CHO Metabolism Sucrose Fructose Glycogen/Starch G1P G6P Trehalose, alpha, alpha’- Inositol- phosphate Inositol-myo Valine Leucine Alanine Asparagine Methionine Lysine Aspartic acid Homoserine Uracil ThreonineIsoleucine PutrescineAgmatine Arginine Ornithine Citruline Proline GlutamineHistidine Pyroglutamic acid Octadecanoic acid Tetradecanoic acid Dodecanoic acid Hexanoic acid Tyrosine4-Hydroxy- phenylpyruvate Tryptophan PhenylpyruvateChorismateShikimic acid Cysteine Serine Glyceric acid Ethanolamine UDP-Glucose M6P DHAP 3-PGA PEP F6P Amino acid biosynthesis Amines and Polyamines Urea cycle gECGSH GSH biosynthesis Pyruvic acid Hexadecanoic acid Malonate HomoCys O-Succinyl- homoserine Lactic acid Glycine F1,6BP Acetyl-CoA Glycolic acid Glutamic acid 2-Oxo- isocaproic acid 2-Isopropyl- malic acid 2-Methyl- malic acid 4-amino- Butyric acid 2-PGA Phenylalanine Butylamine Cadaverine n-Propylamine 2-ethyl-Hexanoic acid Eicosanoic acid Nonanoic acid Heptadecanoic acid GSSG ? ? ? Hydroxy- pyruvic acid Serine Glycine Glyoxylic acid THF Methylene- THF CO 2 NH 4 + Amino acid Keto acid C2 cycle Ru-1,5-bisP 2-P-Glycolic acid Calvin- cycle Fatty acid biosynthesis ? ? ? ? Mannose Ribose Xylose Methyl- α -D- Glucopyranoside β- 1,6-anhydro- Glucose Gluconic acid- 1,5-lactone Xylitol Sorbitol Glycerol-3-phosphate Glycerol N-Acetyl-serine HS - O-Acetyl- serine S-Adenosyl- methionine S-Adenosyl- homocysteine Supplemental Figure S5. Metabolite changes between thiosulfate and sulfur growth conditions. Adenine Guanine Uridine Thymine Xanthine Inosine Pyridine, 2-hydroxy- Pyridine, 3-hydroxy- AMP Orotic acid Nucleobases/Nucleotides

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