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What we agreed to do for NSF & Expected Outcome of this AHM Statement that in the YR2 program plan: Bioscience and Earthscience groups will conduct full-scale.

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Presentation on theme: "What we agreed to do for NSF & Expected Outcome of this AHM Statement that in the YR2 program plan: Bioscience and Earthscience groups will conduct full-scale."— Presentation transcript:

1 What we agreed to do for NSF & Expected Outcome of this AHM Statement that in the YR2 program plan: Bioscience and Earthscience groups will conduct full-scale visualization and collaboration trials using sample datasets over updated OptIPuter testbeds in order to identify key system bottlenecks and usability problems with the software developed in Year 1. Our goals for the next two days: Help participants in technology layers understand more about the applications drivers - eg., field trips. Expand on relationships already established between groups Help focus attention where Opti-IO will have the biggest impact on collaborative work and where tests will guide help guide development of next phase of OpIPuter infrastructure.

2 Team Science Applied to Stretch Goals Enable new understanding of the brain by linking data about macroscopic brain function to its molecular and cellular underpinnings Federate Distributed Multiscale Brain Map Data Federate Distributed Multiscale Brain Map Data Accommodate requirements to collaboratively interact with large-scale data, remote instruments and interactively guide computational operations Accommodate requirements to collaboratively interact with large-scale data, remote instruments and interactively guide computational operations Scales of NS data from Maryann Martone

3 BIRN: Distributed Data, Intensive Analysis 100GB Data Elements; Petabyte Data Sets Comparative and collective Analysis across Data Elements Visualization of Results

4 High speed imaging Instruments EM3100 – Three Dimensional Electron Microscope- –3D imaging electron microscope –High speed camera –1K x 1K, 12bit, 12frame/sec = 24MByte/sec –High resolution camera –4K x 4K, 16bit = 32MByte –Remote control capability RTS2000 – High throughput microscope - –High speed laser scanning microscope –Useful for live cell imaging –Require high computation process –Remote control capability

5 Modern 3D Transmission Electron Microscope Modern 3D Transmission Electron Microscope extreme penetration! Ultra High Voltage EM @ Osaka Univ. 3 Million Electron Volts 15 Meters Tall 140 Tons $$$ > 50M US Dollars 3 Million Electron Volts 15 Meters Tall 140 Tons $$$ > 50M US Dollars only one of these only one of these

6 NASA remote instruments Exploring at the Extremes with Telescience

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8 Demonstrated transfers of data, including real - time imaging (via DV and HDTV), trans-pacific at greater than 1Gbit via native IPv6 Built and utilized high bandwidth demonstration test-bed for microscopic data and remote acquisition of data involving four continents with full IPv6 compliance and won bandwidth challenge (Best Application) NCMIR – First Quarter Accomplishments Completed implementation of high- output electronics necessary for high- speed multi-photon microscope Completed the design and ordered components for the ultra wide field camera system

9 What the Bioscience Team Will Deliver Year 2: Bioscience: Perform collaboration trials:Bioscience: Perform collaboration trials: –w/ UCI - interactive volume rendering & collaborative annotation –w/ Osaka University exploring HDTV over IPv6 featuring future decoder/compression tech. - Streaming Ultra HVEM data, transfer of 4kx4kx14bit images using GridFTP-v6 w/Telescience –w/ Netherlight and UK eScience Ctr in Edinburgh - add data source in UK: optical projection tomo & mouse embryo database –w/ EVL on new NCMIR Geowall - 5x4 with IA-64 cluster –w/ ISI to explore distributed rendering application Complete enhancement of i/o mechanisms for data delivery from high output pulsed-laser based imaging instrument (LM)Complete enhancement of i/o mechanisms for data delivery from high output pulsed-laser based imaging instrument (LM) –Implement HW and firmware modifications Develop applications for real-time data processing of LM data and returning results to OpIPuter-enabled collaborative display systems.Develop applications for real-time data processing of LM data and returning results to OpIPuter-enabled collaborative display systems. –Complete streamlining of deconvolution and montage creation software

10 OptIPuter Visualization Cluster Production rebuild of cluster –Viz cluster was rebuilt after site visit to stabilize the system Software available –Juxtaview Used for viewing imagery for Lake Tahoe, San Diego wildfires, etc. –Vol-a-tile IGPP researchers use Chromium on the OptIPuter Visualization Cluster to explore Fledermaus scene files

11 OptIPuter Visualization Cluster More software/tools –Chromium Used to display Fledermaus scene files on the Big Berthas –Vis5D Used for Christine Reif’s isosurface visualization. –Generic Mapping Tools To be used for Sandwell and Fialko’s INSAR work The OptIPuter Visualization Cluster, only the 10 IBM machines are shown here.

12 ORION Ocean Research Interactive Ocean Network Global Regional Coastal Fiber Optic Satellite Wireless

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14 2004 Plans Geowall2 for EarthScope data collection center at Scripps Volume visualization in a sphere Georeferencing from screen COMPAS integration with IBM SUR grant Dark Fiber Connections to GSFC, JPL, and AMES

15 Education 04 – First Quarter Accomplishments: UCSD/SIO “Hardened” Earth Science Curriculum – web version for national distribution –Teacher version of curriculum (education.sdsc.edu/optiputer)education.sdsc.edu/optiputer Installation of GeoWall in permanent location (mounted), connected to OptIPuter network. –Need to get it also connected to the Internet Student visualization contest

16 Plans for 04 – Neuroscience Education/Socialization of teachers on the use of the GeoWall Connection of Preuss UCSD to the Telescience Portal –Access to remote instruments –Access to Cell Center Database (brain images) – 3D visualization using GeoWall. Partnership with NCMIR education/outreach staff. Development of curriculum for use of this material. –Align with state/national standards.

17 Yr. 2 (to date): UIC/EVL/Lincoln Unit planning, research design, and technology development for “RoomQuake”: Extended simulation of earthquake series using PDAs as simulated seismographs. Student activity: triangulate epicenters, determine magnitudes, physical markers of event histories. Research foci (sensor-based collaboration): –Refinement of hypotheses over time (points => nuanced regions) –Modes of participation (peripheral => central) –Performance skill (triangulation)

18 Yr.2 (upcoming): UIC/EVL/Lincoln RoomQuake –Deployment (Jan-Feb) –Data analysis (Mar-?) –Publication Initiate new project –Simulate OptIPuter-style distributed high-bandwidth collaboration via video tunnel, dedicated network –Work with OptIPuter brain scientists to identify content area that extends “embedded phenomena” paradigm

19 Outreach Geowall2 system to be installed this Spring to support EarthScope visualization (instrument status, location, and progressive data analysis)

20 Outreach Geowall2 system to be installed this Spring to support EarthScope visualization (instrument status, location, and progressive data analysis)

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22 Education 04 – First Quarter Accomplishments “Hardened” Earth Science Curriculum – web version for national distribution Installation of GeoWall in permanent location (mounted), connected to OptIPuter network. Design and instructional unit and research instruments for RoomQuake project.

23 Education 04 – First Quarter Accomplishments: UCSD/SIO “Hardened” Earth Science Curriculum – web version for national distribution –Teacher version of curriculum (education.sdsc.edu/optiputer)education.sdsc.edu/optiputer Installation of GeoWall in permanent location (mounted), connected to OptIPuter network. –Need to get it also connected to the Internet

24 Education 04 – First Quarter Accomplishments: UIC With teachers, completed unit planning & research design for RoomQuake project; extended activity to support remote access Obtained NSF GK-12 grant to extend OptIPuter-based education projects to new Math/Science Initiative (MSI) in Chicago Public Schools

25 Plans for 04 – Neuroscience Education/Socialization of teachers on the use of the GeoWall Connection of Preuss UCSD to the Telescience Portal –Access to remote instruments –Access to Cell Center Database (brain images) – 3D visualization using GeoWall. Partnership with NCMIR education/outreach staff. Development of curriculum for use of this material. –Align with state/national standards.

26 Plans for 04: UIC RoomQuake enactment (Jan-Feb) RoomQuake data analysis (Mar-?) –Transcription/discourse analysis –Analysis of prediction sequences Planning for Year 3 project (neuroscience) Room-to-room collaboration via video tunnel, dedicated network, simulate OptIPuter collaborative inquiry Extend metaphor of “embedded phenomena” Looking for phenomena…

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