2. DNA : The Genetic Material Chapter 9 By: Mrs. Fleck

3. Identifying the Genetic Material Section 1 Transformation- is a change in genotype caused when cells take up foreign genetic material. Griffith’s experiments discovered transformation. -caused harmless bacteria (even dead) to become deadly. Vaccine- is a substance that is prepared from killed or weakened disease causing agents. Virulent- able to cause disease Avery’s experiments- conclude -that DNA is the material responsible for transformation. - Bacteriophage – is a virus that infects bacteria Hershey –Chase Experiments- concluded DNA, rather than proteins, is the heredity material.

4. Section 11.1 Summary – pages 281 - 287 Hershey and Chase labeled the virus DNA with a radioactive isotope and the virus protein with a different isotope. DNA as the genetic material By following the infection of bacterial cells by the labeled viruses, they demonstrated that DNA, rather than protein, entered the cells and caused the bacteria to produce new viruses.

5. Section 11.1 Summary – pages 281 - 287 All actions, such as eating, running, and even thinking, depend on proteins called enzymes. Enzymes are critical for an organism’s function because they control the chemical reactions needed for life. What is DNA? Within the structure of DNA is the information for life—the complete instructions for manufacturing all the proteins for an organism.

6. Section 11.1 Summary – pages 281 - 287 DNA is a polymer made of repeating subunits called nucleotides. Nucleotides have three parts: a simple sugar, a phosphate group, and a nitrogenous base. Phosphate group Sugar (deoxyribose) Nitrogenous base The structure of nucleotides

7. Section 11.1 Summary – pages 281 - 287 The phosphate group is composed of one atom of phosphorus surrounded by four oxygen atoms. The simple sugar in DNA, called deoxyribose (dee ahk sih RI bos), gives DNA its name— deoxyribonucleic acid. The structure of nucleotides

8. Section 11.1 Summary – pages 281 - 287 A nitrogenous base is a carbon ring structure that contains one or more atoms of nitrogen. In DNA, there are four possible nitrogenous bases: adenine (A), guanine (G) are (Purines)=double ring of carbon and nitrogen. Cytosine (C), and thymine (T) are (Pyrimidines)=single ring Adenine (A) Guanine (G)Thymine (T) Cytosine (C) The structure of nucleotides

9. Section 11.1 Summary – pages 281 - 287 Thus, in DNA there are four possible nucleotides, each containing one of these four bases. Base Pairing: A-T (This pairing allows DNA to make G-C a perfect copy of itself.) These pairs are held together by two weak hydrogen bonds. =(Complementary base pairs) Each base is held to the backbone with a stronger bond. The strong bond ensures that its sequence will not get mixed up. The structure of nucleotides

10. Section 11.1 Summary – pages 281 - 287 Nucleotides join together to form long chains, with the phosphate group of one nucleotide bonding to the deoxyribose sugar of an adjacent nucleotide. The phosphate groups and deoxyribose molecules form the backbone of the chain, and the nitrogenous bases stick out like the teeth of a zipper. The structure of nucleotides

11. Section 11.1 Summary – pages 281 - 287 In DNA, the amount of adenine is always equal to the amount of thymine, and the amount of guanine is always equal to the amount of cytosine. The structure of nucleotides

12. Section 11.1 Summary – pages 281 - 287 In 1953, Watson and Crick proposed that DNA is made of two chains of nucleotides held together by nitrogenous bases. The structure of DNA Watson and Crick also proposed that DNA is shaped like a long zipper that is twisted into a coil like a spring. Because DNA is composed of two strands twisted together, its shape is called double helix.

13. Section 11.1 Summary – pages 281 - 287 Replication of DNA Before a cell can divide by mitosis or meiosis, it must first make a copy of its chromosomes. The DNA in the chromosomes is copied in a process called DNA replication. Before DNA can replicate it must uncoil. Without DNA replication, new cells would have only half the DNA of their parents.

14. Section 11.1 Summary – pages 281 - 287 Replication of DNA Click this image to view movie (ch11)

15. Section 11.1 Summary – pages 281 - 287 Replication of DNA DNA Replication

16. Section 11.1 Summary – pages 281 - 287 DNA is copied during interphase prior to mitosis and meiosis. It is important that the new copies are exactly like the original molecules. Copying DNA

17. Roles of Enzymes 1. Chemical bonds connecting the bases break due to enzymes called helicases. These move along the chain and the chain unwinds and separates. 2. The DNA molecule separates into 2 complementary halves. (The areas where the double helix separates are called replication forks.) 3. Free floating nucleotides join with the complementary nucleotides on the single strands. 4. DNA polymerase (enzyme) binds to the separated chain and links the nucleotide back into a long strand. DNA polymerase also has a proof reading role- in the event of a mismatched nucleotide it can replace it with a correct one.

18. The Rate of Replication Each human chromosome is replicated in about 100sections that are 100,000 nucleotides long, each section with its own starting point. Replication forks work in concert, so that an entire human chromosome can be replicated in about 8 hours. Replication forks tend to speed up replication. Replication forks are more plentiful in eukaryotes (100) than in prokaryotes. (2)

19. Section 11.1 Summary – pages 281 - 287 Copying DNA Original DNA Original DNA Strand Free Nucleotides New DNA molecule New DNA Strand New DNA molecule

20. Section 11.1 Summary – pages 281 - 287 The importance of nucleotide sequences Chromosome The sequence of nucleotides forms the unique genetic information of an organism. The closer the relationship is between two organisms, the more similar their DNA nucleotide sequences will be.

21. How Proteins are Made Chapter 10 Mrs. Fleck

22. Section 11.2 Summary – pages 288 - 295 The sequence of nucleotides in DNA contain information. Genes and Proteins This information is put to work through the production of proteins. Proteins fold into complex, three- dimensional shapes to become key cell structures and regulators of cell functions.

23. Section 11.2 Summary – pages 288 - 295 Some proteins become important structures, such as the filaments in muscle tissue. Other proteins, such as enzymes, control chemical reactions that perform key life functions—breaking down glucose molecules in cellular respiration, digesting food, or making spindle fibers during mitosis. Genes and Proteins

24. Section 11.2 Summary – page 288 - 295 Thus, by encoding the instructions for making proteins, DNA controls cells. In fact, enzymes control all the chemical reactions of an organism. Genes and Proteins

25. Section 11.2 Summary – page 2888- 295 You learned earlier that proteins are polymers of amino acids. The sequence of nucleotides in each gene contains information for assembling the string of amino acids that make up a single protein. Genes and Proteins

26. Section 11.2 Summary – pages 288 - 295 RNA like DNA, is a nucleic acid. RNA structure differs from DNA structure in four ways. First, RNA is single stranded—it looks like one-half of a zipper —whereas DNA is double stranded. RNA

27. Section 11.2 Summary – pages 288 - 295 The sugar in RNA is ribose; DNA’s sugar is deoxyribose. RNA is Mobile and DNA is not mobile. Ribose RNA

28. Section 11.2 Summary – pages 288 - 295 Both DNA and RNA contain four nitrogenous bases, but rather than thymine, RNA contains a similar base called uracil (U). Uracil forms a base pair with adenine in RNA, just as thymine does in DNA. Uracil Hydrogen bonds Adenine RNA

29. Section 11.2 Summary – pages 288 - 295 DNA provides workers with the instructions for making the proteins, and workers build the proteins. The workers for protein synthesis are RNA molecules. They take from DNA the instructions on how the protein should be assembled, then—amino acid by amino acid—they assemble the protein. The entire process by which proteins are made is called Gene Expression RNA

30. Section 11.2 Summary – pages 288 - 295 There are three types of RNA that help build proteins. (mRNA, tRNA, rRNA) Messenger RNA (mRNA), brings instructions from DNA in the nucleus to the cell’s factory floor, the cytoplasm. On the factory floor, mRNA moves to the assembly line, a ribosome. RNA

31. Section 11.2 Summary – pages 288 - 295 The ribosome, made of ribosomal RNA (rRNA), binds to the mRNA and uses the instructions to assemble the amino acids in the correct order. RNA

32. Section 11.2 Summary – pages 288 - 295 RNA strand DNA strand RNA strand Transcription A B C

33. Section 11.2 Summary – pages 288 - 295 Transcription In the nucleus, enzymes make an RNA copy of a portion of a DNA strand in a process called transcription. Click image to view movie (ch11)

34. Section 11.2 Summary – pages 288 - 295 Transcription The main difference between transcription and DNA replication is that transcription results in the formation of one single-stranded RNA molecule rather than a double-stranded DNA molecule.

35. Section 11.2 Summary – pages 288 - 295 Transfer RNA (tRNA) is the supplier. Transfer RNA delivers amino acids to the ribosome to be assembled into a protein. RNA Click image to view movie

36. Section 11.2 Summary – pages 288 - 295 The nucleotide sequence transcribed from DNA to a strand of messenger RNA acts as a genetic message, the complete information for the building of a protein. As you know, proteins contain chains of amino acids. You could say that the language of proteins uses an alphabet of amino acids. The Genetic Code

37. Biochemists began to crack the genetic code when they discovered that a group of three nitrogenous bases in mRNA code for one amino acid. Each group is known as a codon. A code is needed to convert the language of mRNA into the language of proteins. The Genetic Code

38. Section 11.2 Summary – pages 288 - 295 The Genetic Code The Messenger RNA Genetic Code First Letter Second Letter U U C A G Third Letter U C A G U C A G U C A G U C A G C A G Phenylalanine (UUU) Phenylalanine (UUC) Leucine (UUA) Leucine (UUG) Leucine (CUU) Leucine (CUC) Leucine (CUA) Leucine (CUG) Isoleucine (AUU) Isoleucine (AUC) Isoleucine (AUA) Methionine; Start (AUG) Valine (GUU) Valine (GUC) Valine (GUA) Valine (GUG) Serine (UCU) Serine (UCC) Serine (UCA) Serine (UCG) Proline (CCU) Proline (CCC) Proline (CCA) Proline (CCG) Threonine (ACU) Threonine (ACC) Threonine (ACA) Threonine (ACG) Alanine (GCU) Alanine (GCC) Alanine (GCA) Alanine (GCG) Tyrosine (UAU) Tyrosine (UAC) Stop (UAA) Stop (UAG) Histadine (CAU) Histadine (CAC) Glutamine (CAA) Glutamine (CAG) Asparagine (AAU) Asparagine (AAC) Lysine (AAA) Lysine (AAG) Aspartate (GAU) Aspartate (GAC) Glutamate (GAA) Glutamate (GAG) Cysteine (UGU) Cysteine (UGC) Stop (UGA) Tryptophan (UGG) Arginine (CGU) Arginine (CGC) Arginine (CGA) Arginine (CGG) Serine (AGU) Serine (AGC) Arginine (AGA) Arginine (AGG) Glycine (GGU) Glycine (GGC) Glycine (GGA) Glycine (GGG)

39. Section 11.2 Summary – pages 288 - 295 All organisms use the same genetic code. This provides evidence that all life on Earth evolved from a common origin. The Genetic Code

40. Section 11.2 Summary – pages 288 - 295 Some codons do not code for amino acids; they provide instructions for making the protein. More than one codon can code for the same amino acid. However, for any one codon, there can be only one amino acid. The Genetic Code

41. Section 11.2 Summary – pages 288 - 295 Translation: From mRNA to Protein The process of converting the information in a sequence of nitrogenous bases in mRNA into a sequence of amino acids in protein is known as translation. Translation takes place at the ribosomes in the cytoplasm. In prokaryotic cells, which have no nucleus, the mRNA is made in the cytoplasm.

42. Section 11.2 Summary – pages 288 - 295 Translation: From mRNA to Protein In eukaryotic cells, mRNA is made in the nucleus and travels to the cytoplasm. In cytoplasm, a ribosome attaches to the strand of mRNA like a clothespin clamped onto a clothesline.

43. Section 11.2 Summary – pages 288 - 295 For proteins to be built, the 20 different amino acids dissolved in the cytoplasm must be brought to the ribosomes. This is the role of transfer RNA. The role of transfer RNA

44. Section 11.2 Summary – pages 288 - 295 Each tRNA molecule attaches to only one type of amino acid. Amino acid Chain of RNA nucleotides Transfer RNA molecule Anticondon The role of transfer RNA

45. Section 11.2 Summary – pages 288 - 295 As translation begins, a ribosome attaches to the starting end of the mRNA strand. Then, tRNA molecules, each carrying a specific amino acid, approach the ribosome. When a tRNA anticodon pairs with the first mRNA codon, the two molecules temporarily join together. The role of transfer RNA

46. Section 11.2 Summary – pages 288 - 295 Usually, the first codon on mRNA is AUG, which codes for the amino acid methionine. AUG signals the start of protein synthesis. When this signal is given, the ribosome slides along the mRNA to the next codon. The role of transfer RNA

47. Section 11.2 Summary – pages 288 - 295 The role of transfer RNA Ribosome mRNA codon

48. Section 11.2 Summary – pages 288 - 295 tRNA anticodon Methionine The role of transfer RNA

49. Section 11.2 Summary – pages 288 - 295 A new tRNA molecule carrying an amino acid pairs with the second mRNA codon. Alanine The role of transfer RNA

50. Section 11.2 Summary – pages 288- 295 The amino acids are joined when a peptide bond is formed between them. Alanine Methionine Peptide bond The role of transfer RNA

51. Section 11.2 Summary – pages 288 - 295 A chain of amino acids is formed until the stop codon is reached on the mRNA strand. Stop codon The role of transfer RNA

52. Section 10.2 Gene Regulation and Structure Both prokaryotic and Eukaryotic cells are able to regulate which genes are expressed and which are not, depending on the cell’s needs. Gene regulation is necessary in living organisms to avoid wasting their energy on making proteins that are not needed.

53. Turning Genes On and Off Operator: piece of DNA that serves as an on and off switch for transcription. (it aids in shielding the RNA polymerase binding site of a specific gene. Operon: a group of genes that code for enzymes involved in the same function, their promoter site, and the operator that controls them. The operon that controls the metabolism of lactose is called the lac operon. The lac operon- enables a bacterium to build the proteins needed for lactose metabolism only when lactose is present. Repressor: a protein that binds to an operator and inhibits transcription. (Blocks movement of RNA polymerase)

54. Gene Regulation Occurrence Is more complex in Eukaryotes Can occur before, during or after transcription. Can occur after translation.

55. Section 11.2 Summary – pages 288 - 295 Not all the nucleotides in the DNA of eukaryotic cells carry instructions—or code— for making proteins. Genes usually contain many long noncoding nucleotide sequences, called introns, that are scattered among the coding sequences. RNA Processing

56. Section 11.2 Summary – pages 288 - 295 RNA Processing Regions that contain information are called exons because they are expressed. (=or translated) When mRNA is transcribed from DNA, both introns and exons are copied. The introns must be removed from the mRNA before it can function to make a protein.

57. Section 11.2 Summary – pages 288 - 295 Enzymes in the nucleus cut out the intron segments and paste the mRNA back together. The mRNA then leaves the nucleus and travels to the ribosome. Many Biologists think this organization of genes adds evolutionary flexibility RNA Processing

58. 11.3 Section Summary 6.3 – pages 296 - 301 Organisms have evolved many ways to protect their DNA from changes. Mutations In spite of these mechanisms, however, changes in the DNA occasionally do occur. Any change in DNA sequence is called a mutation. Mutations can be caused by errors in replication, transcription, cell division, or by external agents.

59. 11.3 Section Summary 6.3 – pages 296 - 301 Mutations can affect the reproductive cells of an organism by changing the sequence of nucleotides within a gene in a sperm or an egg cell. Mutations in reproductive cells If this cell takes part in fertilization, the altered gene would become part of the genetic makeup of the offspring.

60. 11.3 Section Summary 6.3 – pages 296 - 301 What happens if powerful radiation, such as gamma radiation, hits the DNA of a nonreproductive cell, a cell of the body such as in skin, muscle, or bone? If the cell’s DNA is changed, this mutation would not be passed on to offspring. However, the mutation may cause problems for the individual. Mutations in body cells

61. 11.3 Section Summary 6.3 – pages 296 - 301 Mutations in body cells Damage to a gene may impair the function of the cell. When that cell divides, the new cells also will have the same mutation. Some mutations of DNA in body cells affect genes that control cell division. This can result in the cells growing and dividing rapidly, producing cancer.

62. 11.3 Section Summary 6.3 – pages 296 - 301 A point mutation is a change in a single base pair in DNA. A change in a single nitrogenous base can change the entire structure of a protein because a change in a single amino acid can affect the shape of the protein. The effects of point mutations

63. 11.3 Section Summary 6.3 – pages 296 - 301 The effects of point mutations Normal Point mutation mRNA Protein Stop mRNA Protein Replace G with A

64. 11.3 Section Summary 6.3 – pages 296 - 301 Frameshift mutations What would happen if a single base were lost from a DNA strand? This new sequence with the deleted base would be transcribed into mRNA. But then, the mRNA would be out of position by one base. As a result, every codon after the deleted base would be different.

65. 11.3 Section Summary 6.3 – pages 296 - 301 Frame shift mutations This mutation would cause nearly every amino acid in the protein after the deletion to be changed. A mutation in which a single base is added or deleted from DNA is called a frameshift mutation because it shifts the reading of codons by one base.

66. 11.3 Section Summary 6.3 – pages 296 - 301 Frameshift mutations mRNA Protein Frameshift mutation Deletion of U

67. 11.3 Section Summary 6.3 – pages 296 - 301 Changes may occur in chromosomes as well as in genes. Alterations to chromosomes may occur in a variety of ways. Structural changes in chromosomes are called chromosomal mutations. Chromosomal Alterations

68. 11.3 Section Summary 6.3 – pages 296 - 301 Chromosomal mutations occur in all living organisms, but they are especially common in plants. Few chromosomal mutations are passed on to the next generation because the zygote usually dies. Chromosomal Alterations

69. 11.3 Section Summary 6.3 – pages 296 - 301 In cases where the zygote lives and develops, the mature organism is often sterile and thus incapable of producing offspring. When a part of a chromosome is left out, a deletion occurs. Deletion A B C D E F G HA B C E F G H Chromosomal Alterations

70. 11.3 Section Summary 6.3 – pages 296 - 301 When part of a chromatid breaks off and attaches to its sister chromatid, an insertion occurs. The result is a duplication of genes on the same chromosome. Insertion A B C D E F G H A B C B C D E F G H Chromosomal Alterations

71. 11.3 Section Summary 6.3 – pages 296 - 301 When part of one chromosome breaks off and is added to a different chromosome, a translocation occurs. A B E F DCBX A W C H G G E H D F W X Y Z YZ Translocation Chromosomal Alterations

72. 11.3 Section Summary 6.3 – pages 296 - 301 Some mutations seem to just happen, perhaps as a mistake in base pairing during DNA replication. These mutations are said to be spontaneous. However, many mutations are caused by factors in the environment. Causes of Mutations

73. 11.3 Section Summary 6.3 – pages 296 - 301 Any agent that can cause a change in DNA is called a mutagen. Mutagens include radiation, chemicals, and even high temperatures. Forms of radiation, such as X rays, cosmic rays, ultraviolet light, and nuclear radiation, are dangerous mutagens because the energy they contain can damage or break apart DNA. Causes of Mutations

74. 11.3 Section Summary 6.3 – pages 296 - 301 Causes of Mutations The breaking and reforming of a double- stranded DNA molecule can result in deletions. Chemical mutagens include dioxins, asbestos, benzene, and formaldehyde, substances that are commonly found in buildings and in the environment. Chemical mutagens usually cause substitution mutations.

75. 11.3 Section Summary 6.3 – pages 296 - 301 Repairing DNA Repair mechanisms that fix mutations in cells have evolved. Enzymes proofread the DNA and replace incorrect nucleotides with correct nucleotides. These repair mechanisms work extremely well, but they are not perfect. The greater the exposure to a mutagen such as UV light, the more likely is the chance that a mistake will not be corrected.