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Unit 1: Cellular Energetics
Part I – Macromolecules Part II – Enzymes Part III – Cellular Respiration Part IV – DNA Replication Part V – Protein Synthesis
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Part I – Macromolecules
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The questions: What are monomers? What are polymers?
How are polymers synthesized (built) and hydrolyzed (broken down)?
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Dehydration Synthesis (condensation)
Reaction that joins molecules together by removing water Polymerization = the synthesis of a polymer Polymers are built from monomers via dehydration synthesis
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Hydrolysis Breaks polymers into their constituent monomers (“building blocks”) by lysing (breaking) bonds through the addition of water.
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1. Carbohydrates (polysaccharides)
Contain CHO General molecular formula = CH2O Aldoses and Ketoses vary in location of carbonyl group -C=O Aldoses have carbonyl on ends (glucose) Ketoses have carbonyl within molecule (fructose)
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Monomer = monosaccharide
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Disaccharides (double sugars)
2 monosaccharides joined by a glycosidic linkage Covalent bond formed between two monosaccharides by dehydration synthesis
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Examples of disaccharides
Maltose = glucose + glucose Sucrose = glucose + fructose Lactose = glucose + galactose
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Polysaccharides (many sugars)
Long polymers of many monosaccharides Architecture & function determined by position of glycosidic linkages Alpha linkages are breakable by Eukaryotes Starch, glycogen Beta linkages are NOT Cellulose, chitin
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Types of Polysaccharides
A. Structural polysaccharides: Beta glycosidic linkages Cellulose - plant cell walls, structural molecule Chitin - exoskeleton in insects, arachnids, crustaceans
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B. Food storage molecules
Alpha glycosidic linkages Starch- food storage molecules in plants Glycogen- food storage molecules in animals
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2. Lipids Group shares one common trait – no affinity for water
Do NOT consist of monomers → polymers Highly varied group Biologically important: Fats Phospholipids Steriods
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A. Fats Made of glycerol and 3 fatty acids
Saturated fatty acids (animal fats) are carbon chains with single bonds only Ex: Butter, lard; solids at room temp. Unsaturated fatty acids (plant fats) have at least one double bond (kinks in chain) Monounsaturated = only one double bond Polyunsaturated = many double bonds Ex: Vegetable oils; liquid at room temp
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“Hydrogenated” fatty acids
Hydrogen is artificially added to replace double bonds with single bonds. Liquids are solidified Ex: peanut butter, margarine
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B. Phospholipids 2 fatty acids (tails) attached to phosphate group “head” When placed in water they self assemble into a micelle
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C. Steroids Lipids characterized by carbon skeletons consisting of four fused rings Ex. Cholesterol Common component of animal cell membranes (this is why animal meat is higher in cholesterol) Precursor from which other steroids, including sex hormones, are synthesized
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3. Proteins Most diverse of all macromolecules
Humans have over twenty thousand proteins in their bodies, each performing a specific function
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General Categories of Proteins
1) Structural: Spider silk 2) Storage : Egg white 3) Transport: Hemoglobin 4) Hormonal: Insulin 5) Receptor: Transport protein 6) Contractile: Actin & myosin 7) Defensive: Antibodies 8) Enzymatic: Digestive enzymes
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Monomers = Amino Acids 20 total amino acids
8 “essential” AA’s; must be derived from food 12 can be synthesized by body THREE TYPES Non-polar (8) Polar (7) Electrically charged (acidic, basic) (5)
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General structure of amino acid
All amino acids have a carboxyl group (-COOH) on one end and an amino group (NH3) on the other R group determines their interactions with one another to form secondary, tertiary, and quaternary structure
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Polymers = polypeptides
Formed by dehydration synthesis Peptide bonds: bonds between adjacent amino acids
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Protein shape determines function
Primary structure: sequence of amino acids
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Secondary Structure: coiling or folding of polypeptide chain in repeated patterns
Ex: Alpha helices Ex: Beta pleated sheets
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Tertiary structure: irregular contortions from interactions between side chains (R-groups) with one another H-bonds Disulfide bridges Hydrophobic interactions
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Quaternary structure: 2 or more polypeptide chains aggregated into 1 functional molecule
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4. Nucleic Acids Nucleic acids are the building blocks of both DNA and RNA DNA directs its own replication, transmits genetic information to future offspring, and controls RNA synthesis RNA controls protein synthesis
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Nucleotides
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Monomer = Nucleotides Nucleotide - building block of nucleic acids
Composed of three subunits: 1) Pentose sugar (ribose or deoxyribose) 2) Phosphate groups comprise the “sugar- phosphate” backbone 3) Nitrogenous bases = variable portions of the molecule
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DNA vs. RNA
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Polymer = polynucleotide
Adjacent nucleotides are joined by covalent bonds called phosphodiester linkages between the -OH on one nucleotide and the phosphate on the next nucleotide
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Complementary Base Pairing
Always a Pyrimidine with a Purine Purines are Adenine & Guanine Pyrimidines are Cytosine, Thymine (DNA only), and Uracil (RNA only)
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Complementary Base Pairing
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Why Do Bases Bond This Way?
Hydrogen bonds: A and T form two hydrogen bonds G and C form three hydrogen bonds Therefore, there is no way to bond inappropriately
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Base Pairing T A
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Base Pairing C G
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Macro Structure of DNA Double Helix- “Twisted Ladder” of A-T and G-C base pairing DNA contains genes (thousands) that code for proteins In association with proteins (histones) DNA makes chromosomes (46 in humans) Stored in nuclei of Eukaryotic cells
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