1. Copyright © 2008 Pearson Education, Inc., publishing as Benjamin Cummings Chapter 3 From Chemistry to Energy to Life

2. Copyright © 2008 Pearson Education, Inc., publishing as Benjamin Cummings This lecture will help you understand: The fundamentals of environmental chemistry The molecular building blocks of organisms Energy and energy flow Photosynthesis, respiration, and chemosynthesis Major hypotheses for life’s origins Our knowledge of early life

3. Copyright © 2008 Pearson Education, Inc., publishing as Benjamin Cummings DO NOT BE AFRAID!!!!

4. Copyright © 2008 Pearson Education, Inc., publishing as Benjamin Cummings Chemistry is crucial for understanding: How gases contribute to global climate change How pollutants cause acid rain The effects on health of wildlife and people Water pollution Wastewater treatment Atmospheric ozone depletion Energy issues

5. Copyright © 2008 Pearson Education, Inc., publishing as Benjamin Cummings Central Case: Bioremediation of the Exxon Valdez Oil Spill In 1989, 11 million gallons coated the Alaskan coastline -The largest spill in U.S. history Defiled the pristine environment Tourism plummeted and jobs were lost Bioremediation= pollution cleanup through enhanced natural biodegradation

6. Copyright © 2008 Pearson Education, Inc., publishing as Benjamin Cummings Chemical building blocks Matter = all material in the universe that has mass and occupies space -Can be transformed from one type of substance into others -But it cannot be destroyed or created which is… -The law of conservation of matter -Helps us understand that the amount of matter stays constant -It is recycled in nutrient cycles and ecosystems

7. Copyright © 2008 Pearson Education, Inc., publishing as Benjamin Cummings Chemical building blocks Element = a fundamental type of matter, with a given set of properties -Atoms = the smallest components that maintain an element’s chemical properties -The atom’s nucleus has protons (positively charged particles) and neutrons (particles lacking electric charge) -Atomic number = the defined number of protons -Electrons = negatively charged particles surrounding the nucleus -Balances the positively charged protons

8. Copyright © 2008 Pearson Education, Inc., publishing as Benjamin Cummings APE MAN Atomic Number Protons Electrons Mass (Atomic) - Atomic Number = Neutrons

9. Copyright © 2008 Pearson Education, Inc., publishing as Benjamin Cummings Atomic Number= Protons Atomic Number= protons & electrons All atoms of an element have same number of protons Mass number= protons + neutrons Different # of neutrons= different mass number -Called an isotope

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11. The structure of an atom

12. Copyright © 2008 Pearson Education, Inc., publishing as Benjamin Cummings Chemical building blocks Isotopes = atoms with differing numbers of neutrons -Mass number = the combined number of protons and neutrons -Isotopes of an element behave differently -Some isotopes are radioactive and decay until they become non- radioactive stable isotopes -Emit high-energy radiation

13. Copyright © 2008 Pearson Education, Inc., publishing as Benjamin Cummings Radioactive decay Half-life = the amount of time it takes for one-half of the atoms to give off radiation and decay -Different radioisotopes have different half-lives ranging from fractions of a second to billions of years -Uranium-235, used in commercial nuclear power, has a half-life of 700 million years Atoms may also gain or lose electrons to become ions, electrically charged atoms

14. Copyright © 2008 Pearson Education, Inc., publishing as Benjamin Cummings Importance of Isotopes: The Science Behind the Stories Application: The properties of elements observed can be used as tools to aid scientists in various ways. Some isotopes decay in a slow, steady, and predictable fashion. Radioactive dating has been used to determine the age of biologically derived implements and very recent fossils (carbon-14), very early fossils (uranium-238), geological formations (potassium-40), and changes in climate and sea level (oxygen-18).

15. Copyright © 2008 Pearson Education, Inc., publishing as Benjamin Cummings Importance of Isotopes: The Science Behind the Stories Stable isotopes have isotopic signatures that do not change. Used to analyze -Seabird and marine mammal diets through excretion (nitrogen-14/nitrogen-15) -Photosynthetic pathways and herbivore diets and to determine when humans switched diets from hunter- gatherer to agricultural, as well as to determine where an animal has been (carbon-12/carbon-13) -Study long-range migrations of birds and mammals (hydrogen in rainfall).

16. Copyright © 2008 Pearson Education, Inc., publishing as Benjamin Cummings http://www.teachersdomain.org/resources/tdc02/sci/life/e vo/radiodating/index.htmlhttp://www.teachersdomain.org/resources/tdc02/sci/life/e vo/radiodating/index.html

17. Copyright © 2008 Pearson Education, Inc., publishing as Benjamin Cummings Molecules & Compounds Molecules = Combinations of two or more atoms -Oxygen gas = O 2 Compounds = A molecule composed of atoms of two or more different elements -Water = two hydrogen atoms bonded to one oxygen atom: H 2 0 -Carbon dioxide = one carbon atom with two oxygen atoms: CO 2

18. Copyright © 2008 Pearson Education, Inc., publishing as Benjamin Cummings Atoms are held together with bonds Covalent bond = atoms in a molecule share electrons -For example, the atoms that bond to form H 2 0 Polar covalent bonds = Atoms share electrons unequally, with one atom exerting a greater pull -The oxygen in a water molecule attracts electrons Ionic bonds = an electron is transferred from one atom to another -Are not molecules, but are salts, such as table salt, NaCl Solutions = no chemical bonding, but is a mixture of substances (i.e., blood, oil)

19. Copyright © 2008 Pearson Education, Inc., publishing as Benjamin Cummings Water: the main reason life can exist Hydrogen bond = oxygen from one water molecule attracts hydrogen atoms of another -Special type of covalent bond -Very weak Water’s strong cohesion allows nutrients and waste to be transported Water absorbs heat with only small changes in its temperature, which stabilizes systems

20. Copyright © 2008 Pearson Education, Inc., publishing as Benjamin Cummings Additional properties of water Less dense ice floats on liquid water Water dissolves other molecules

21. Copyright © 2008 Pearson Education, Inc., publishing as Benjamin Cummings Hydrogen ions determine acidity The pH scale ranges from 0 to 14 and quantifies the acidity of solutions -Acidic solutions have a pH less than 7 -Basic solutions have a pH greater than 7 -Neutral solutions have a pH of 7 A substance with pH of 6 contains 10 times as many hydrogen ions as a substance with pH of 7

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23. Organic Compounds Organic Compounds = carbon atoms joined by covalent bonds and may include other elements -Such as nitrogen, oxygen, sulfur, and phosphorus Hydrocarbons = contain only carbon and hydrogen -The simplest hydrocarbon is methane (CH 4 ) -Hydrocarbons can be a gas, liquid or solid

24. Copyright © 2008 Pearson Education, Inc., publishing as Benjamin Cummings Macromolecules Polymers = long chains of repeated molecules -The building blocks of life Macromolecules = large-size molecules -Three types of polymers are essential to life -Proteins -Nucleic acids -Carbohydrates -Lipids (are not polymers, but are also essential)

25. Copyright © 2008 Pearson Education, Inc., publishing as Benjamin Cummings Proteins Produce tissues, provide structural support, store and others transport energy -Animals use proteins to generate skin, hair, muscles, and tendons -Some function as components of the immune system -They can serve as enzymes, molecules that promote certain chemical reactions

26. Copyright © 2008 Pearson Education, Inc., publishing as Benjamin Cummings A special process involving proteins Deoxyribonucleic acid (DNA) and Ribonucleic Acid (RNA) carry the hereditary information of organisms -Long chains of nucleotides that contain -Sugar, phosphate, and a nitrogen base Information in DNA is rewritten to RNA RNA directs amino acid assembly into proteins Genes = regions of DNA that code for proteins that perform certain functions Genome = an organism’s genes -Divided into chromosomes

27. Copyright © 2008 Pearson Education, Inc., publishing as Benjamin Cummings Carbohydrates and lipids Carbohydrates = consist of atoms of carbon, hydrogen, and oxygen in a 1:2:1 ratio -Sugars = simple carbohydrates -Glucose = provides energy for cells -Complex carbohydrates build structures and store energy -Starch = a complex carbohydrate Lipids = a chemically diverse group of compounds grouped together because they don’t dissolve in water -For energy, cell membranes, structural support, and steroids

28. Copyright © 2008 Pearson Education, Inc., publishing as Benjamin Cummings We create synthetic polymers Plastics = synthetic (human-made) polymers -Best known by their brand names (Nylon, Teflon, Kevlar) -Many are derived from petroleum hydrocarbons -Valuable because they resist chemical breakdown -Problematic because they cause long-lasting waste and pollution -Wildlife and health problems, water quality issues, harmful to marine animals -We must design less-polluting alternatives and increase recycling

29. Copyright © 2008 Pearson Education, Inc., publishing as Benjamin Cummings Litter Kills Seals

30. Copyright © 2008 Pearson Education, Inc., publishing as Benjamin Cummings Organization of matter in living things Cell = the basic unit of life’s organization “Karyon”= kernel Eukaryotes = multi-celled organisms containing internal structures (organelles) -Plants, animals, fungi, protists -Ribosomes= synthesize proteins -Mitrochondria= extract energy from sugars and fats -Nucleus= houses DNA Prokaryotes = single-celled organisms l acking organelles and a nucleus -Bacteria

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32. Hierarchy of matter in organisms Matter is organized in a hierarchy of levels, from atoms through cells through organ systems Population (pop’n)= same species

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34. Energy fundamentals Energy = that which can change the position, physical composition or temperature of matter -Potential energy = energy of position -Kinetic energy = energy of motion -Chemical energy = potential energy held in the bonds between atoms Kinetic energy is changed into potential energy to produce motion, action, and heat

35. Copyright © 2008 Pearson Education, Inc., publishing as Benjamin Cummings Energy Energy is the capacity to do work and transfer heat -Kinetic energy has mass and speed; wind and electricity are examples. -Potential energy is stored energy, ready to be used; an unlit match is an example. Potential energy can be changed to kinetic energy

36. Copyright © 2008 Pearson Education, Inc., publishing as Benjamin Cummings Energy is conserved...but changes in quality First law of thermodynamics = energy can change forms, but cannot be created or destroyed Second law of thermodynamics = the nature of energy changes from a more-ordered to a less-ordered state -Entropy = an increasing state of disorder

37. Copyright © 2008 Pearson Education, Inc., publishing as Benjamin Cummings The law of conservation of matter states that no atoms are created/destroyed during a physical or chemical change

38. Copyright © 2008 Pearson Education, Inc., publishing as Benjamin Cummings Law of Conservation of Matter Matter is not destroyed Matter only changes form There is no “throwing away”

39. Copyright © 2008 Pearson Education, Inc., publishing as Benjamin Cummings First Law of Thermodynamics Energy is not created or destroyed Energy only changes form Can’t get something for nothing Energy input = Energy output

40. Copyright © 2008 Pearson Education, Inc., publishing as Benjamin Cummings Second Law of Thermodynamics When energy changes from one form to another, some of the useful energy is degraded to lower-quality, less useful energy You can’t break even in terms of energy quality

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42. Examples of the Second Law Cars: gasoline produces only 20-25% useful energy Ordinary light bulb: 5% energy is useful light, rest is low-quality heat Living systems: quality energy lost with every conversion

43. Copyright © 2008 Pearson Education, Inc., publishing as Benjamin Cummings People harness energy An energy source’s nature determines how easily energy can be harnessed -Petroleum provide large amounts of efficient energy -Sunlight provides low-quality energy, because it is spread out and difficult to harness Energy conversion efficiency = the ratio of useful energy output to the amount needing to be input -An engine burns petroleum to power a car, but most energy is lost as heat Organisms maintain life by consuming energy

44. Copyright © 2008 Pearson Education, Inc., publishing as Benjamin Cummings The sun’s energy powers life The sun releases radiation from the electromagnetic spectrum -Some is visible light Solar energy drives weather and climate, and powers plant growth

45. Copyright © 2008 Pearson Education, Inc., publishing as Benjamin Cummings Photosynthesis Autotrophs (primary producers) = organisms such as green plants, algae and cyanobacteria produce their own food from the sun’s energy Photosynthesis = the process of turning light energy from the sun into chemical energy -Carbon dioxide + water + sun’s energy is converted into sugars and high-quality energy

46. Copyright © 2008 Pearson Education, Inc., publishing as Benjamin Cummings carbon dioxide + water + light energy → glucose + oxygen

47. Copyright © 2008 Pearson Education, Inc., publishing as Benjamin Cummings Photosynthesis produces food Chloroplasts = organelles where photosynthesis occurs -Contain chlorophyll = a light-absorbing pigment -Light- dependent reaction = splits water by using solar energy -(light independent reaction) Calvin cycle = links carbon atoms from carbon dioxide into sugar (glucose) 6CO 2 + 6H 2 0 + the sun’s energy C 6 H 12 O 6 + 6O 2

48. Copyright © 2008 Pearson Education, Inc., publishing as Benjamin Cummings Cellular respiration releases chemical energy Organisms use chemical energy from photosynthesis Oxygen is used to convert glucose into water + carbon dioxide + energy Heterotrophs = organisms that gain energy by feeding on others -Animals, fungi, microbes C 6 H 12 O 6 + 6O 2 6CO 2 + 6H 2 0 + energy

49. Copyright © 2008 Pearson Education, Inc., publishing as Benjamin Cummings Solar energy Chemical energy (photosynthesis) Chemical energy (food) Mechanical energy (moving, thinking, living) Waste heat Waste heat Waste heat Waste heat Second Law of Thermodynamics

50. Copyright © 2008 Pearson Education, Inc., publishing as Benjamin Cummings Geothermal energy powers Earth’s systems Hydrothermal vents = host entire communities that thrive in high temperature and pressure -Lack of sun prevents photosynthesis -Chemosynthesis = uses energy in hydrogen sulfide to produce sugar 6CO 2 + 6H 2 0 + 3H 2 S C 6 H 12 O 6 + 3H 2 SO 4

51. Copyright © 2008 Pearson Education, Inc., publishing as Benjamin Cummings Early Earth was a very different place 4.5 billion years ago, Earth was a hostile place -Severe volcanic and tectonic activity -Intense ultraviolet energy from the sun -No oxygen existed in the atmosphere, until photosynthesis developed in microbes -No life existed

52. Copyright © 2008 Pearson Education, Inc., publishing as Benjamin Cummings http://www.teachersdomain.org/search/?q=hydrothermal+ vents&fq_grade=PK&fq_grade=PShttp://www.teachersdomain.org/search/?q=hydrothermal+ vents&fq_grade=PK&fq_grade=PS

53. Copyright © 2008 Pearson Education, Inc., publishing as Benjamin Cummings Several hypotheses explain life’s origin Primordial soup (the heterotrophic hypothesis) “Seeds” from space (the panspermia hypothesis) Life from the depths (the chemoautotrophic hypothesis)

54. Copyright © 2008 Pearson Education, Inc., publishing as Benjamin Cummings Primordial soup: The heterotrophic hypothesis life originated from a ‘primordial soup’ of simple inorganic chemicals dissolved in the ocean’s surface waters or tidal shallows. Lab experiments have provided evidence that such a process can work. - 1953 Miller and Urey made simple organic molecules in a test tube!

55. Copyright © 2008 Pearson Education, Inc., publishing as Benjamin Cummings “Seeds” from space: The panspermia hypothesis Microbes from elsewhere in the solar system traveled on meteorites that crashed to Earth. The Murchison meteorite, which fell in Australia in 1969, was found to contain many amino acids, suggesting that amino acids within rock can survive impact.

56. Copyright © 2008 Pearson Education, Inc., publishing as Benjamin Cummings Life from the depths: The chemoautotrophic hypothesis Life originated at deep-sea hydrothermal vents, where sulfur was abundant. The first organisms were chemoautotrophs, creating their own food from hydrogen sulfide. Genetic analysis of the relationships of present-day organisms suggests that some of the most ancient ancestors of today’s life forms lived in extremely hot, wet environments.

57. Copyright © 2008 Pearson Education, Inc., publishing as Benjamin Cummings http://www.teachersdomain.org/resource/tdc02.sci.ess.ear thsys.deepseavents/http://www.teachersdomain.org/resource/tdc02.sci.ess.ear thsys.deepseavents/

58. Copyright © 2008 Pearson Education, Inc., publishing as Benjamin Cummings The fossil record teaches about life’s history Single-celled bacteria occurred on Earth 3 billion years ago Fossil = an imprint in stone of a dead organism Fossil record = gives information about the history of past life

59. Copyright © 2008 Pearson Education, Inc., publishing as Benjamin Cummings The fossil record shows that… Earlier organisms evolved into later ones The vast majority of species are extinct Numbers of species increase over time Earlier organisms were smaller and simpler Several mass extinctions have occurred Large, complex organisms occurred 600 million years ago -Plants, animals, fungi

60. Copyright © 2008 Pearson Education, Inc., publishing as Benjamin Cummings Present-day organisms help decipher history Biologists use present-day organisms to get information about evolution Archaea = single-celled prokaryotes very different from bacteria The tree of life now consists of 3 prongs: bacteria, archaea, eukaryotes

61. Copyright © 2008 Pearson Education, Inc., publishing as Benjamin Cummings Conclusion Life on Earth has flourished for over 3 billion years Deciphering life’s origins depends on understanding -Energy -Energy flow -Chemistry Chemistry can also help find solutions to environmental problems

62. Copyright © 2008 Pearson Education, Inc., publishing as Benjamin Cummings QUESTION: Review Which of the following part of an atom has a negative charge? a)Proton b)Neutron c)Electron d)Hydrogen

63. Copyright © 2008 Pearson Education, Inc., publishing as Benjamin Cummings QUESTION: Review Which of the following is NOT a reason water is essential for life? a)Water can absorb large amounts of heat without changing temperature b)Waste and nutrients can be transported in water c)Ice floats on liquid water, so fish survive cold winters d)Water usually cannot dissolve other molecules

64. Copyright © 2008 Pearson Education, Inc., publishing as Benjamin Cummings QUESTION: Review Of the following macromolecules, which one is NOT a polymer? a)Lipids b)Proteins c)Carbohydrates d)Nucleic acids

65. Copyright © 2008 Pearson Education, Inc., publishing as Benjamin Cummings QUESTION: Review Which of the following organisms is an autotroph? a)Deep-sea tubeworm b)Horse c)Pine tree d)None of these

66. Copyright © 2008 Pearson Education, Inc., publishing as Benjamin Cummings QUESTION: Interpreting Graphs and Data Which is the most acidic material? a) Soft soap b)Rainwater c)Acid rain d)Lemon juice

67. Copyright © 2008 Pearson Education, Inc., publishing as Benjamin Cummings All of the following are abiotic factors except a)light b)bacteria c)pH d)size of soil particles e)water

68. Copyright © 2008 Pearson Education, Inc., publishing as Benjamin Cummings Autotrophs a)can live without heterotrophs b)are know as producers c)carry on photosynthesis d)all of these answers e)none of these answers

69. Copyright © 2008 Pearson Education, Inc., publishing as Benjamin Cummings Photosynthesis a)converts glucose into energy and water b)requires the combustion of carbon c)produces carbon dioxide and oxygen gas d)yields glucose and oxygen gas as products e)yields glucose and carbon dioxide as products

70. Copyright © 2008 Pearson Education, Inc., publishing as Benjamin Cummings 30 Days: global average footprint -21 global hectares sustainable footprint -15 global hectares http://www.eecom.net/smag.html: On average the ecological footprint in the United States is more than 20 acres per person, but the reality is there are only 4.5 acres of biologically productive acres per person.http://www.eecom.net/smag.html