1. Transfection

2. What is transfection? Broadly defined, transfection is the process of artificially introducing nucleic acids (DNA or RNA) into cells, utilizing means other than viral infection. Such introductions of foreign nucleic acid using various chemical, biological, or physical methods can result in a change of the properties of the cell, allowing the study of gene function and protein expression in the context of the cell. In transfection, the introduced nucleic acid may exist in the cells transiently, such that it is only expressed for a limited period of time and does not replicate, or it may be stable and integrate into the genome of the recipient, replicating when the host genome replicates

3. Applications The two main purposes of transfection are to produce recombinant proteins, or to specifically enhance or inhibit gene expression in transfected cells. As such, transfection is a powerful analytical tool for the study of the function and regulation of genes or gene products, for the production of transgenic organisms, and as a method for gene therapy.

4. Gene expression Transfection is most commonly performed to express a protein of interest in cultured cells (or an animal model) through the use of a plasmid vector or mRNA. Expression of the protein in eukaryotic cells allows the recombinant protein to be produced with proper folding and post- translational modifications required for its function. Further, introducing proteins with readily detectable markers and other modifications into cells allows the study of promoter and enhancer sequences or protein interactions. In addition, transfection can be used in various forms of bioproduction depending upon the transfection strategy. For example, delivery of reprogramming transcription factors enables the generation of induced pluripotent stem cell (iPSC). Stable transfection, on the other hand, provides the means for the bioproduction of various therapeutic molecules.

5. Gene inhibition Another frequent use of transfection is in inhibiting the expression of specific proteins through RNA interference (RNAi). In mammalian cells, RNAi occurs through endogenously expressed non-coding RNA in the form of microRNAs (miRNAs), which are derived from a double-stranded RNA (dsRNA) precursor. The precursor is processed to a mature miRNA that becomes part of a RNA-induced silencing complex (RISC), which acts to inhibit translation of complementary target mRNAs. Vector-based systems express miRNA precursors or short hairpin RNA (shRNA) precursors that are processed by endogenous machinery to produce miRNAs or shRNAs, respectively, which then act to inhibit gene expression. These systems allow stable transfection of recombinant constructs, and can permit inducible expression of precursor molecules. Chemically synthesized short/small interfering RNAs (siRNAs) can also be incorporated into a RISC and induce gene silencing by targeting complementary mRNA for degradation. Modifications to siRNAs help to prevent off-target effects, and also to ensure that the active strand of the dsRNA is loaded into the RISC.

6. Transfection Method Cationic Lipid Transfection Specially designed cationic lipids facilitate DNA & siRNA delivery into cells. Electroporation A mechanical transfection method that uses an electrical pulse to create temporary pores in cell membranes. In Vivo Transfection Effective & easy-to-use in vivo RNAi delivery reagents used to achieve phenotypic alternations in animals. Cotransfection Simultaneous transfection of 2 separate nucleic acid molecules.

7. Rna Interference Example petunia plants in which genes for pigmentation are silenced by RNAi. The left plant is wild-type; the right plants contain transgenes that induce suppression of both transgene and endogenous gene expression, giving rise to the unpigmented white areas of the flower

8. RNA interference (RNAi) is a biological process in which RNA molecules inhibit gene expression, typically by causing the destruction of specific mRNA molecules. Andrew Fire and Craig C. Mello shared the 2006 Nobel Prize in Physiology or Medicine for their work on RNA interference in the nematode worm Caenorhabditis elegans, which they published in 1998. Two types of small ribonucleic acid (RNA) molecules – microRNA (miRNA) and small interfering RNA (siRNA) – are central to RNA interference. RNAs are the direct products of genes, and these small RNAs can bind to other specific messenger RNA (mRNA) molecules and either increase or decrease their activity, for example by preventing an mRNA from producing a protein. RNA interference has an important role in defending cells against parasitic nucleotide sequences – viruses and transposons. It also influences development.

9. The RNAi pathway is found in many eukaryotes, including animals, and is initiated by the enzyme Dicer, which cleaves long double-stranded RNA (dsRNA) molecules into short double stranded fragments of ~20 nucleotide siRNAs. Each siRNA is unwound into two single-stranded RNAs (ssRNAs), the passenger strand and the guide strand. The passenger strand is degraded and the guide strand is incorporated into the RNA-induced silencing complex (RISC). The most well-studied outcome is post-transcriptional gene silencing, which occurs when the guide strand pairs with a complementary sequence in a messenger RNA molecule and induces cleavage by Argonaute, the catalytic component of the RISC complex.

10. RNAi is a valuable research tool, both in cell culture and in living organisms, because synthetic dsRNA introduced into cells can selectively and robustly induce suppression of specific genes of interest. RNAi may be used for large-scale screens that systematically shut down each gene in the cell, which can help to identify the components necessary for a particular cellular process or an event such as cell division. The pathway is also used as a practical tool in biotechnology, medicine and insecticides.