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GGBN Working Group for DNA/Tissue Classes TDWG 2012 Conference Working Group: Katie Barker, John Deck, Gabi Droege, Paul Flemons, Anton Guentsch, Éamonn Ó Tuama, Robert Robbins, Jamie Whitacre, John Wiezoreck
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Purpose of WG Method for publishing DarwinCore GGBN member data on tissues and DNA Develop a DNA/Tissue class to DarwinCore, based on existing ABCDDNA model
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Discussion Outcomes DarwinCore DNA tissue classes – New “Basis of Record”, sample – Four new classes Sample facts (e.g., tissue, DNA, RNA, environmental) – Kind of Unit (e.g., blood, muscle, mRNA, soil, water) Amplification (e.g., Genbank accession number, primers, sequence length) Preservation (e.g., liquid nitrogen, frozen, silica) Preparation (e.g., method, date)
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Occurrence SampleFact Preparation Preservation Amplification GNA literature reference Simple image extension Resource Relationship Identification n n n n n n n n 1 1 1 1 1 1 1 1
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Next 12 months Explore possibility of adding sample to the “core” Implement classes in IPT Run SI “test case”, as part of DFG proposal – Index data from IPT – Identify and fill gaps/issues TDWG 2013, review standard December 2013, propose DNA/Tissue classes and ABCDDNA as new TDWG standard
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Thank You. Katie Barker GGBN and GGI Coordinator Smithsonian Institution
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