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Published byChester Shepherd Modified over 8 years ago
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Taverna in e-Lico e-Lico is an EU Project (2009-2012) to create a virtual laboratory for data mining and data-intensive sciences Main partners: –University of Geneva – project coordination –University of Manchester – Taverna and text mining –Institut National de la Santé et de la Recherche Médicale (Toulouse) – biological data –Greece – image mining –Rapid I – Rapid Miner/Analytics –University of Zurich – planner
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Who in Manchester Robert Stevens Simon Jupp Rishi Ramgolam James Eales Alan Williams
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What has been done so far? Populous – adaption of RightField. Used for data entry and ontology creation. Taverna plugin to expose Rapid Miner operators as Taverna services Taverna extension to create data mining plans that are translated into workflows Rapid Analytics repository browser to allow choosing and uploading of data, so getting metadata Skinning of myExperiment – done by Don Cruickshank
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What will be done - 1? Saving of provenance and data and workflow – call it a run. Uploading the run to e-Lico’s myExperiment Ensuring semantics so that the data is known to be the inputs to port “fred” of the workflow. Even better, provenance item X is for invocation 237 of service Y in run 93 of workflow…
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What will be done – 2? Re-opening of a run from myExperiment Integration of provenance from RapidMiner’s operator with the workflow provenance Tweaking of the Rapid Miner and planning extensions Additional/improved renderers – desire for Cytoscape SPARQL service plugin Development and documentation of workflow patterns
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What will be done – 3? Coping with “dominating operators” Training workshops Benchmarking and documentation of results
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What will go back into Taverna Plugin to expose Rapid Miner services Plugin to allow planning of data mining SPARQL service Workflow run upload/browse/reload Repository browser possibly as additional data source New renderers
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What is e-Lico doing that is affected by other projects The saving of a workflow run depends upon –myExperiment having semantic pack capabilities –Some stronger mechanism to specify relationships (wf4ever?) Browsing/view of workflow run may leverage –Polish MSc student’s work Integration of provenance –Overlap with eScience Central
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What is e-Lico doing that affects other projects e-Lico workflow run may be a good test case for wf4ever Renderers –Do not know specific projects – should start list Data gathering mechanism –Ditto Populous –Highly related to RightField –What about TavernaLC (Taverna in a spreadsheet)? SPARQL service –Harmonization/relationship with SADI
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How could eLico be of use Data mining services –Use in data-oriented projects e.g. MethodBox or SysMO? Metadata about data –MethodBox or SysMO? Planning of workflows –Does it work in practice?
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