1. Biosciences Working Group Update & Report Back Wilfred W. Li, Ph.D., UCSD, USA Habibah Wahab, Ph.D., USM, Malaysia Hosted by IOIT Hanoi, Vietnam, Oct 29, 2009

2. Recap of PRAGMA 16 – Daejon, Korea, Mar 2009 Infectious Diseases Research in Cyberinfrastructure (iDRiC Workshop)--KISTI Drugscreener-G – KISTI, Korea Grid Enabled Virtural Screening Service – ASGC, Taiwan CADD Pipeline – NBCR, USA WISDOM project – CNRS, EU Glyco-M*Grid – Kookmin & Konkuk U, Korea

3. Follow-up activities Continued development of application specific services – AutoDock, NAMD as Opal services Continued development of workflows – NBCR Summer Institute training of CADD pipeline Glyco-M*Grid – Suntae Hwang Release of Opal 2.1 with condor and CSF4 4.0.5.1 plugins Ability to use Condor web service interface for virtual screening using TeraGrid

4. New Since PRAGMA 16 Real-time bioMEdical data Streaming and visualization (RIMES) – CNIC, China PRIME Students – USM, NTU, CNIC – Osaka U., Monash U. – New in 2010: JLU, host of PRAGMA 19 MURPA Students – Cheminformatics and Nimrod/K based workflows Calit2 Summer Internship – Kevin Wu

5. Real-time bioMEdical data Streaming and visualization (RIMES) Kevin Dong, CNIC

6. Next Milestone Production use of Gfarm for sharing simulation data – Production use by PRAGMA 18 Virtual machine scheduling using CSF4 – Demonstration by PRAGMA 19

7. Scientific Results Newhouse et al, JACS 2009

8. PRIME/Calit2 Summer Project

9. New Challenges Virtualization – What does it mean to us? Production environment – Where is it? What form should it take? The Connection between Productivity and Grid/Cloud – Most work is still done on local clusters, the desire to use the grid/Cloud is there, but the infrastructure is still evolving Sociology of software engineering – Can we collaborate using Facebook?

10. GAP -- The architecture overview Service Oriented Architecture Multi-user Environment Common Interface to Heterogeneous Environment Portable & light- weight Client H-Y. Chen, ASGC

11. http://demo.mgrid.or.kr Parallel Processing Lab. http://service.mgrid.or.kr S Huang, KU

12. Concluding Remark Please visit the demo site http://demo.mgrid.or.kr and use the site http://service.mgrid.or.kr Parallel Processing Lab.

13. Themes Technology trend and user service Shared development Diversity and outreach, other biological problems and associated challenges – CDI library for virtual screening – Public ones free for use – GVS – based upon Glite

14. 4) Training and education opportunities – ISGC annual meeting, one day or two day workshop – Diana, Ganga – Sharing of experience Make user participate default VO with resources – Users may want to use different programs, rescoring, associated support

15. Application Deployment Jopera – Different workflows. Conversion is difficult between workflow programs GEMLCA – Globus related development M*Grid – Looking for users – Setting up PRAGMA instance – How to use Gfarm

16. Application Sharing and Testing RIMES – Kookmin will test RIMES Authentication mechanism – How can we use the Tsukuba-GAMA authentication?

17. Lessons on the Grid CNGrid – Education network ChinaGrid – BioinformationGrid – Qinghua University