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Published byDanielle Knight Modified over 11 years ago
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Working Group Meeting 2013 Objective 3: Deploy tools to increase user-specified flexible queries
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Current model 2 MaizeGDB currently allows researchers to access data record-by-record
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Goal DATA: Generating sets of data ANALYSIS: Extracting information based on a set of data 3 Allow researchers access to larger sets of data
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Generating sets of data Physical location Co-occupancy Characteristics Co-Expression Function 4
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Extracting data based on a set of data DATA: Sequence Annotations Attributes ANALYSIS Enrichment Expression 5
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BioMart Free, Open Source Standardized Allows integration Flexible Plant DBs: Gramene, Ensembl Plants, Rice-Map, Potato database, Phytozome MODs : WormBase, Mouse Genome Informatics, and SalmonDB. 6
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Sequence 7
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Annotations 8
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Attributes 9
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InterMine Free, Open Source Data model is flexible and extensible Fast and flexible querying Web interface and analysis tools (focus on list analysis) Actively being developed and deployed: RatMine, MouseMine, YeastMine, WormMine, ZFINMine, and FlyMine 10
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Enrichment 11
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