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Working Group Meeting 2013 Objective 3: Deploy tools to increase user-specified flexible queries.

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Presentation on theme: "Working Group Meeting 2013 Objective 3: Deploy tools to increase user-specified flexible queries."— Presentation transcript:

1 Working Group Meeting 2013 Objective 3: Deploy tools to increase user-specified flexible queries

2 Current model 2 MaizeGDB currently allows researchers to access data record-by-record

3 Goal DATA: Generating sets of data ANALYSIS: Extracting information based on a set of data 3 Allow researchers access to larger sets of data

4 Generating sets of data Physical location Co-occupancy Characteristics Co-Expression Function 4

5 Extracting data based on a set of data DATA: Sequence Annotations Attributes ANALYSIS Enrichment Expression 5

6 BioMart Free, Open Source Standardized Allows integration Flexible Plant DBs: Gramene, Ensembl Plants, Rice-Map, Potato database, Phytozome MODs : WormBase, Mouse Genome Informatics, and SalmonDB. 6

7 Sequence 7

8 Annotations 8

9 Attributes 9

10 InterMine Free, Open Source Data model is flexible and extensible Fast and flexible querying Web interface and analysis tools (focus on list analysis) Actively being developed and deployed: RatMine, MouseMine, YeastMine, WormMine, ZFINMine, and FlyMine 10

11 Enrichment 11


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