1. Electron transport

3. Chemiosmotic Theory Electron Transport: Electrons carried by reduced coenzymes are passed through a chain of proteins and coenzymes to drive the generation of a proton gradient across the inner mitochondrial membrane Oxidative Phosphorylation: The proton gradient runs downhill to drive the synthesis of ATP Electron transport is coupled with oxidative phosphorylation It all happens in or at the inner mitochondrial membrane

4. Outer Membrane – Freely permeable to small molecules and ions. Contains porins with 10,000 dalton limit Inner membrane – Protein rich (4:1 protein:lipid). Impermeable. Contains ETR, ATP synthase, transporters. Cristae – Highly folded inner membrane structure. Increase surface area. Matrix- “cytosol” of the mitochondria. Protein rich (500 mg/ml) Contains TCA cycle enzymes, pyruvate dehydrogenase, fatty and amino acid oxidation pathway, DNA, ribosomes Intermembrane Space – composition similar to cytosol

6. Reduction Potentials High E o ' indicates a strong tendency to be reduced Crucial equation:  G o ' = -nF  E o '  E o ' = E o '(acceptor) - E o '(donor) NADH + ½ O 2 + H +  NAD + + H + + H 2 O NAD + + H + + 2e -  NADH E o’ = -0.32 ½ O 2 + 2e - + 2H +  H 2 O E o’ = 0.816  G o ‘= -nF(E o '(O 2 ) - E o '(NADH))  G o ‘= -nF(0.82 –(-0.32)) = -nF(1.14) = -2(96.5 kJ mol -1 V -1 )(1.136) = -220 kJ mol -1

7. Electron Transport Four protein complexes in the inner mitochondrial membrane A lipid soluble coenzyme (UQ, CoQ) and a water soluble protein (cyt c) shuttle between protein complexes Electrons generally fall in energy through the chain - from complexes I and II to complex IV

8. Standard reduction potentials of the major respiratory electron carriers.

10. Complex I NADH-CoQ Reductase Electron transfer from NADH to CoQ More than 30 protein subunits - mass of 850 kD 1 st step is 2 e - transfer from NADH to FMN FMNH 2 converts 2 e - to 1 e - transfer Four H + transported out per 2 e- NADH + H + FMN Fe 2+ S CoQ NAD + FMNH 2 Fe 3+ SCoQH 2

11. Succinate FAD Fe 2+ S CoQ FumarateFADH 2 Fe 3+ SCoQH 2 Complex II Succinate-CoQ Reductase aka succinate dehydrogenase (from TCA cycle!) four subunits Two largest subunits contain 2 Fe-S proteins Other subunits involved in binding succinate dehydrogenase to membrane and passing e - to Ubiquinone FAD accepts 2 e - and then passes 1 e - at a time to Fe-S protein No protons pumped from this step

12. Q-Cycle Transfer from the 2 e - carrier ubiquinone (QH2) to Complex III must occur 1 e - at a time. Works by two single electron transfer steps taking advantage of the stable semiquinone intermediate Also allows for the pumping of 4 protons out of mitochondria at Complex III Myxothiazol (antifungal agent) inhibits electron transfer from UQH 2 and Complex III. UQ UQ.- UQH 2

14. Complex III CoQ-Cytochrome c Reductase CoQ passes electrons to cyt c (and pumps H + ) in a unique redox cycle known as the Q cycle Cytochromes, like Fe in Fe-S clusters, are one- electron transfer agents cyt c is a water-soluble electron carrier 4 protons pumped out of mitochondria (2 from UQH 2 ) CoQH 2 cyt b ox Fe 2+ S cyt c 1 ox cyt c red CoQcyt b red Fe 3+ S cyt c 1 red cyt c ox

15. cyt c red cyt a ox cyt a 3 red O2O2 cyt c ox cyt a red cyt a 3 ox 2 H 2 O Complex IV Cytochrome c Oxidase Electrons from cyt c are used in a four- electron reduction of O 2 to produce 2H 2 O Oxygen is thus the terminal acceptor of electrons in the electron transport pathway - the end! Cytochrome c oxidase utilizes 2 hemes (a and a 3 ) and 2 copper sites Complex IV also transports H + (2 protons)

16. Inhibitors of Oxidative Phosphorylation Rotenone inhibits Complex I - and helps natives of the Amazon rain forest catch fish! Cyanide, azide and CO inhibit Complex IV, binding tightly to the ferric form (Fe 3+ ) of a 3 Oligomycin and DCCD are ATP synthase inhibitors

18. Shuttling Electron Carriers into the Mitochondrion The inner mitochondrial membrane is impermeable to NADH. Electrons carried by NADH that are created in the cytoplasm (such as in glycolysis) must be shuttled into the mitochondrial matrix before they can enter the ETS

19. Glycerol phosphate shuttle

20. malate/aspartate shuttle system

21. Electron transport is coupled to oxidative phosphorylation

22. Uncouplers Uncouplers disrupt the tight coupling between electron transport and oxidative phosphorylation by dissipating the proton gradient Uncouplers are hydrophobic molecules with a dissociable proton They shuttle back and forth across the membrane, carrying protons to dissipate the gradient w/o oxidative-phosphorylation energy lost as heat Dinitrophenol once used as diet drug, people ran 107 o F temperatures

24. Oxidative phosphorylation

25. Proton Motive Force (  p ) PMF is the energy of the proton concentration gradient The chemical (  pH= pH in – pH out ) potential and the electrical potential(  in  –  out ) contribute to PMF  G = nf  and  G = –2.303nRT  pH  G for transporting 1 H+ from inner membrane space to matrix =  G = nf  –2.303nRT  pH  p =  p =  G/nF  p =  –(0.059)  pH

26. Proton Motive Force (  p ) What contributes more to PMF,  or  pH? In liver  =-0.17V and  pH=0.5  p =  –(0.059)  pH = -0.17-(0.059)(0.5V)  p = -0.20 V  /  p=(-0.17V/-0.20V) X 100% = 85% 85% of the free energy is derived form 

27. Proton Motive Force (  p ) How much free energy generated from one proton?  G = nF  P = (1)(96.48kJ/Vmole)(-0.2V) = -19 kJ/mole To make 1 ATP need 30 kJ/mole. Need to translocate more than one proton to make one ATP ETC translocates 10 protons per NADH

28. ATP Synthase Proton diffusion through the protein drives ATP synthesis! Two parts: F 1 and F 0

29. Racker & Stoeckenius confirmed Mitchell’s hypothesis using vesicles containing the ATP synthase and bacteriorhodopsin

30. ADP + Pi ATP + H 2 O In catalytic site K eq = 1 ATP formation is easy step But once ATP is formed, it binds very tightly to catalytic site (binding constant = 10 -12 M) Proton induced conformation change weakens affinity of active site for ATP (binding constant = 10 -5 ) Binding Change Mechanism

31. Different conformation at 3 catalytic sites Conformation changes due to proton influx ADP + Pi bind to open-site in exchange for ATP Proton driven conformational change (loose site) causes substrates to bind more tightly ATP is formed in tight-site. Requires influx of three protons to get one ATP

32. ATPase is a Rotating Motor Bound  subunits to glass slide Attached a fluroescent actin chain to  subunit. Hydrolysis of ATP to ADP + Pi cause filament to rotate 120 o per ATP.

33. How does proton flow cause rotation?

39. Active Transport of ATP, ADP and Pi Across Mitochondrial Inner Membrane ATP is synthesized in the matrix Need to export for use in other cell compartments ADP and Pi must be imported into the matrix from the cytosol so more ATP can be made. Require the use of transporters

40. Adenine nucleotide translocator = ADP/ATP antiport. Exchange of ATP for ADP causes a change in  due to net export of –1 charge Some of the energy generated from the proton gradient (PMF) is used here Pi is imported into the matrix with a proton using a symport. Because negative charge on the phosphate is canceled by positive charge on proton no effect on  but effects  pH and therefore PMF. Transport of ATP, ADP and Pi

41. NRG required to export 1 ATP and import 1 ADP and 1 Pi = NRG generated from influx of one proton. Influx of three protons required by ATPase to form 1 ATP molecule. Need the influx of a total of 4 protons for each ATP made. Transport of ATP, ADP and Pi

42. P/O Ratio The ratio of ATPs formed per oxygens reduced e - transport chain yields 10 H + pumped out per electron pair from NADH to oxygen 4 H + flow back into matrix per ATP to cytosol 10/4 = 2.5 for electrons entering as NADH For electrons entering as succinate (FADH 2 ), about 6 H + pumped per electron pair to oxygen 6/4 = 1.5 for electrons entering as succinate

43. Regulation of Oxidative Phosphorylation ADP is required for respiration (oxygen consumption through ETC) to occur. At low ADP levels oxidative phosphorylation low. ADP levels reflect rate of ATP consumption and energy state of the cell. Intramolecular ATP/ADP ratios also impt. At high ATP/ADP, ATP acts as an allosteric inhibitor for Complex IV (cytochrome oxidase) Inhibition is reversed by increasing ADP levels.

44. Uncouplers Uncouplers disrupt the tight coupling between electron transport and oxidative phosphorylation by dissipating the proton gradient Uncouplers are hydrophobic molecules with a dissociable proton They shuttle back and forth across the membrane, carrying protons to dissipate the gradient w/o oxidative-phosphorylation energy lost as heat Dinitrophenol once used as diet drug, people ran 107 o F temperatures

46. Physiological Uncoupling Uncoupling of ETC and Ox-phos occurs in animals as a means to produce heat = nonshivering thermogenesis. Impt. In hibernating mammals, neborn animals and mammals adapted to cold Occurs in brown adipose tissues (rich in mitochondria) Uncoupling protein (UCP) = channel to allow influx of protons to matrix (dissipates proton gradient)

48. Uncoupling in Plants Plants generate heat during fruit ripening and to emit odors to attach pollinators. Plants can by pass normal ATP generating ETC Alternative ETC in plants does not pump protons, just transfers electron. All plant have this pathway, actual physiological reason not known