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Implementation of a Validated Statistical Computing Environment Presented by Jeff Schumack, Associate Director – Drug Development Information September 16, 2005
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2 Statistical Computing Environment (SCE) Data Repository of source code, input data & output Version controlled programs and output Reusable programming ability Links to Clinical Data Management System (CDMS) & Documentum
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3 Prototype Determined requirements Performed market search Worked collaboratively to achieve our vision Conducted extensive pilot
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4 SCE: Where Does it Fit in? Capture and Organize Data Analyze Data, Generate and Deliver Reports Clintrial/CRO SAS, Files Documentum/Publishing Clinical Data Management Clinical BiostatisticsRegulatory Affairs Statistical Computing Environment Analysis, Programming and Reporting under 21 CFR Part 11 compliance Submission of Reports to the FDA
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5 Interfaces Clinical Data Management Core SCE Documentum
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6 Clinical Data Management Connector
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7 Extraction Process Query CDMS SAS or XML Execute data extraction –Extraction in context –Record data and output under correct study
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8 Audit Trails Who What When Comment if any
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9 Core SCE Functionality
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10 Database Connectivity Oracle Role Based Security Require username / password Secure – only authorized personnel allowed to connect Level of access based on user privilege
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11 External Applications SAS system version 8.12 (or higher) R (Splus) version 1.9.1 or higher UltraEdit version 10 or higher
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12 Repository Secure Oracle Database Easily retrievable Hierarchical Structure –Indication -> Study -> Programs (etc.)
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13 Traceable Pathway SCE provides Clear pathway from field to report Mechanism for data extraction of analyses Dependency map of input-to-programs-to-output Push analyses into Documentum Audit Trails
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14 Dependency Map Graphically represent program-to-input-to-output – Including version numbers
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15 Security Manager Individual user accounts Password Management: LDAP Permissions: –Group –User –Project
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16 File Management Folder types / File types / File properties Check out / Check in File annotations Source Code Editor File Viewers Execution and display results, logs, graphics Audit Trails
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17 Pack & Go Pull files from SCE onto local disks –Indication –Study –Analysis Useful for Archival Collaboration with external contributors –Partners –CROs –Data Monitoring Committees
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18 Study Setup - Templates Nested Hierarchy templates –Indication –Study –Analyses Replicate Studies using templates Retire templates no longer in use
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19 Job Management Server based running of jobs Define jobs / Submit jobs / Run jobs / Run & Record Input / output dependencies Table of Content user interface / comment blocks Relative file pathways –Macro search –Common Code search Batch execution / job sequencing Record Outputs Traceability – Dependency Mapping –Input data / program / macros -> main program -> Output (s)
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20 Life Cycle Management Draft / Quality Controlled / Final Business rules Draft from Final
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21 Reporting Audit Trail reports Output formats – PDF, XML, RTF etc. Combine Outputs Interface with external reporting tools
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22 Documentum Connector
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23 Documentum Authentication Username / password protected Documentum user information verification Documentum permissions verification
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24 User Interface Automatic population of Documentum based on lifecycle state of document in SCE Manual population based on user triggers User comments Version controls
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25 Audit Trails Who What When Version control information
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26 Conclusion New technology Close to realizing HGS SCE vision Acknowledgments: –HGS Biostats & IT teams –Waban Software –Alan Hopkins Contact Information: –Jeff_Schumack@hgsi.comJeff_Schumack@hgsi.com –240-314-4414
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