1. Atmosphere: iPlant’s Cloud Computing Service

2. Overview How to connect to Atmosphere & start a virtual machine Ways to log in to a VM A simple R command Features of a VM – Sharing a session with collaborators – Printing a file – Copy & Paste from my local computer to the VM

3. How to Connect to Atmosphere & Initiate a VM Model we follow: App store Access to preconfigured Virtual Machines Log in screen Screen after log in VM status atmo.iplantcollaborative.org

4. Different Ways to Log in to VMs

5. iDrop - A Way to Move Data https://pods.iplantcollaborative.org/wiki/display/start/Using+iDrop

6. Use Case #1 Study the mechanism of duplication – Sizes of genes – Forces under they are at – Specific pattern of nt exchange How Gene duplication impacts stress response evolution of A.thaliana paralogs How paralogs are regulated

7. Flow of Hands-on Copy file(s) from my computer to data storage iDROP Copy file to data storage, then to my VM home dir iput & iget Start R from the command line in VM R Move to the dir where my file is setwd Read the file into R Read.csv Make a plot(s) pdf, plot & hist

8. Results

9. Printing to Local Printer

10. Sharing with other users Sharing of a Session

11. Copy and Paste

12. Help and Support http://tinyurl.com/atmosphere-manual Support: support@iplantcollaborative.orgsupport@iplantcollaborative.org