1. © NIH National Center for Image-Guided Therapy, November, 2008 System Set-up for the Integration of BrainLab, BioImage Suite and Slicer3 Haiying Liu Surgical Planning Lab Brigham & Women's Hospital Harvard Medical School

2. © NIH National Center for Image-Guided Therapy, November, 2008 Acknowledgements National Center for Image Guided Therapy (NIH 5U41RR019703)

3. © NIH National Center for Image-Guided Therapy, November, 2008 Outline Overview of the system Configure BrainLab Configure BioImage Suite Connect BioImage Suite to BrianLab Connect BioImage Suite to Slicer3

4. © NIH National Center for Image-Guided Therapy, November, 2008 Overview BioImage Suite BrainLab Slicer3 VVLink OpenIGTLink Slicer3 communicates with BrainLab through BioImage Suite.

5. © NIH National Center for Image-Guided Therapy, November, 2008 Configure BrianLab On BrainLab (see next slide), get to Tools->VV Link. Activate VV Link. This may need a license. Record the password in the red oval. The password may be changed if BrainLab plugs in a different ethernet jacket.

6. © NIH National Center for Image-Guided Therapy, November, 2008 Configure BrianLab (From Xenophon Papademetris)

7. © NIH National Center for Image-Guided Therapy, November, 2008 Configure BioImage Suite Left click to bring Preferences widget

8. © NIH National Center for Image-Guided Therapy, November, 2008 Configure BioImage Suite 1. Enable OpenIGTLink and VectorVisionLink 2. Left click to save Preferences 3. Left click to close and then exit BrainLab

9. © NIH National Center for Image-Guided Therapy, November, 2008 Connect BioImage Suite to BrianLab 1. Left click the Neurosurgery button 2. Left click to bring VVLink/OpenIGTLink widget

10. © NIH National Center for Image-Guided Therapy, November, 2008 Connect BioImage Suite to BrianLab Left click to bring VVLink Tool widget

11. © NIH National Center for Image-Guided Therapy, November, 2008 Connect BioImage Suite to BrianLab 1. Add a new server (BrainLab system) 2. The new server will be listed here. Make it visible 3. Left click to connect

12. © NIH National Center for Image-Guided Therapy, November, 2008 Connect BioImage Suite to Slicer3 1. Left click to add a new connector 2. Check it as server 3. Check it as active

13. © NIH National Center for Image-Guided Therapy, November, 2008 Connect BioImage Suite to Slicer3 1. Input the server (Slicer3) name or its IP address and port number 2. Left click to connect 3. Check to send tracking data 4. Check to convert LPS to RAS system 5. Update rate 6. Left check to send image to Slicer3