Presentation is loading. Please wait.

Presentation is loading. Please wait.

Putting TAIR to work for you hands-on workshop for beginning and advanced users

Published byIsaiah Costello Modified over 10 years ago

Similar presentations

Presentation on theme: "Putting TAIR to work for you hands-on workshop for beginning and advanced users"— Presentation transcript:

1 Putting TAIR to work for you hands-on workshop for beginning and advanced users http://arabidopsis.org

2 Todays topics: PART 1 – HOW TO: Find a gene in TAIR and useful information about that gene – Gene function, expression pattern, protein domains Use TAIR genome browsers and find out details of the TAIR9 release Generate, work with and download larger sets of data at TAIR – List of genes, sequences, annotations, etc PART 2 – PRACTICE YOUR SKILLS

3 http://arabidopsis.org

4

5

6

7

8

9

10

11

12

13

14

15

16

17

18

19

20

21

22

23

24

25

26

27

28

29

30

Download ppt "Putting TAIR to work for you hands-on workshop for beginning and advanced users"

Similar presentations

Model Organism Databases and Community Annotation

Model Organism Databases and Community Annotation
Annotation of Gene Function …and how thats useful to you.

Annotation of Gene Function …and how thats useful to you.
The Arabidopsis Information Resource (TAIR)

The Arabidopsis Information Resource (TAIR)
Part I: Tips and techniques from curators Kate Dreher TAIR, AraCyc, PMN Carnegie Institution for Science.

Part I: Tips and techniques from curators Kate Dreher TAIR, AraCyc, PMN Carnegie Institution for Science.
Microme Workshop, EBI 7 th October 2013 Programmatic Access to Ensembl Bacteria Dan Staines Ensembl Genomes.

Microme Workshop, EBI 7 th October 2013 Programmatic Access to Ensembl Bacteria Dan Staines Ensembl Genomes.
SG KB 2009 NIGMS Workshop: Enabling Technologies for Structural Biology Section on Structural Analysis Margaret J. Gabanyi March 4, 2009 How to Use the.

SG KB 2009 NIGMS Workshop: Enabling Technologies for Structural Biology Section on Structural Analysis Margaret J. Gabanyi March 4, 2009 How to Use the.
The Rice Functional Genomics Program of China cDNA microarray database (RIFGP-CDMD) consists of complete datasets, including the probe sequences, microarray.

The Rice Functional Genomics Program of China cDNA microarray database (RIFGP-CDMD) consists of complete datasets, including the probe sequences, microarray.
 Preparing undergraduates to succeed in college and beyond in a bioinformatics-rich curriculum  Discussion of existing resources, opportunities, and.

 Preparing undergraduates to succeed in college and beyond in a bioinformatics-rich curriculum  Discussion of existing resources, opportunities, and.
POC tutorial#3: Annotation This tutorial will run automatically in Quicktime. To run the tutorial at your own pace use the internal controllers within.

POC tutorial#3: Annotation This tutorial will run automatically in Quicktime. To run the tutorial at your own pace use the internal controllers within.
Encyclopedia of Genetics, Genomics, Proteomics and Bioinformatics USC School of Medicine Library.

Encyclopedia of Genetics, Genomics, Proteomics and Bioinformatics USC School of Medicine Library.
Tutorial 7 Genome browser. Free, open source, on-line broswer for genomes Contains ~100 genomes, from nematodes to human. Many tools that can be used.

Tutorial 7 Genome browser. Free, open source, on-line broswer for genomes Contains ~100 genomes, from nematodes to human. Many tools that can be used.
UCSC Archaeal genome browser Advanced browsing September 19, 2006 David Bernick, Aaron Cozen and Todd Lowe September 19, 2006 David Bernick, Aaron Cozen.

UCSC Archaeal genome browser Advanced browsing September 19, 2006 David Bernick, Aaron Cozen and Todd Lowe September 19, 2006 David Bernick, Aaron Cozen.
Lab 3.41 Demo: Exploiting the UCSC Genome Browser Stefanie Butland UBC Bioinformatics Centre

Lab 3.41 Demo: Exploiting the UCSC Genome Browser Stefanie Butland UBC Bioinformatics Centre
Bio 465 Summary. Overview Conserved DNA Conserved DNA Drug Targets, TreeSAAP Drug Targets, TreeSAAP Next Generation Sequencing Next Generation Sequencing.

Bio 465 Summary. Overview Conserved DNA Conserved DNA Drug Targets, TreeSAAP Drug Targets, TreeSAAP Next Generation Sequencing Next Generation Sequencing.
Genomic Database - Ensembl Ka-Lok Ng Department of Bioinformatics Asia University.

Genomic Database - Ensembl Ka-Lok Ng Department of Bioinformatics Asia University.
Genome Browsing with the UCSC Genome Browser

Genome Browsing with the UCSC Genome Browser
UCSC Archaeal genome browser September 19, 2006 David Bernick, Aaron Cozen and Todd Lowe September 19, 2006 David Bernick, Aaron Cozen and Todd Lowe.

UCSC Archaeal genome browser September 19, 2006 David Bernick, Aaron Cozen and Todd Lowe September 19, 2006 David Bernick, Aaron Cozen and Todd Lowe.
WormBase Workshop: 2015 International C. elegans Meeting Tools & Resources InterMine / WormMine – Chris Grove JBrowse – Scott Cain The WormBase Ontology.

WormBase Workshop: 2015 International C. elegans Meeting Tools & Resources InterMine / WormMine – Chris Grove JBrowse – Scott Cain The WormBase Ontology.
MCB 317 Genetics and Genomics MCB 317 Topic 10, part 3 A Story of Transcription.

MCB 317 Genetics and Genomics MCB 317 Topic 10, part 3 A Story of Transcription.
Input for the Bayesian Phylogenetic Workflow All Input values could be loaded as text file or typing directly. Only for the multifasta file is advised.

Input for the Bayesian Phylogenetic Workflow All Input values could be loaded as text file or typing directly. Only for the multifasta file is advised.

Similar presentations

Ads by Google