1. Deliverable Readiness Review LexEVS 5.1 December 17, 2009

2. Agenda Deliverable Review Tasks Review & Accomplishments Demo of LexEVS 5.1 Q&A

3. Deliverables (as defined in SOW) Monthly Status Report Project Summary Report System & Software Design & Implementation Plan System & Software Test Plan Custom Loading Feasibility Report and Recommendation Recommendation Regarding Value Set Support Test Results Software Code and Documentation Deployment Package

4. Tasks (as defined in SOW) Task 1: Project Management Task 2: Implement LexEVS 5.1 Task 3: Update RRF loader to Support Metathesaurus Task 4: Improve the API to Efficiently Support Expanded Search Options and Large Concept Relationships Sets Task 5: Investigate Value Set Enhancements to LexEVS Task 6: Improve LexEVS Loading Framework Task 7: Support LexWiki Integration with CDISC Task 8: Ensure LexEVS 5.1 Supports BDA Task 9: Maintain Current Versions of LexEVS Task 10: caBIG Boot Camp Task 11: Participate in Annual Meeting

5. Task 1: Project Management Monthly Status Report Weekly status reports posted on Gforge at: https://gforge.nci.nih.gov/docman/index.php?group_id=4 91&selected_doc_group_id=4474&language_id=1 https://gforge.nci.nih.gov/docman/index.php?group_id=4 91&selected_doc_group_id=4474&language_id=1 Monthly status reports submitted via email. Project Summary Report A draft has been completed and the final copy will be sent via email this Friday, December 18 th. The project plan for LexEVS 5.1 is also located on Gforge at: v5.1/Management v5.1/Management

6. Task 2: Implement LexEVS 5.1 System and Software Design and Implementation Plan Created on Confluence Wiki at: https://wiki.nci.nih.gov/display/EVS/LexEVS+5.1+Design+ Document https://wiki.nci.nih.gov/display/EVS/LexEVS+5.1+Design+ Document System and Software Test Plan Located on Gforge at: https://gforge.nci.nih.gov/docman/index.php?group_id=4 91&selected_doc_group_id=5035&language_id=1 https://gforge.nci.nih.gov/docman/index.php?group_id=4 91&selected_doc_group_id=5035&language_id=1 Software All scope items were tracked via Gforge under Release Development Items. Additionally all new feature requests and/or bugs were also tracked in Gforge. All code has been checked into NCI Gforge SVN and release files have been uploaded to Gforge under v5.1/Release Documentation and Files.NCI Gforge SVNv5.1/Release Documentation and Files

7. Task 2: Implement LexEVS 5.1 Service The LexEVS 5.1 grid services will be deployed on 12/17/09 and registered on caGrid. This can be verified by querying the caGrid portal found at: http://cagrid- portal.nci.nih.gov/web/guest/discovery.http://cagrid- portal.nci.nih.gov/web/guest/discovery Technical Documentation All documentation is located on the Vocabulary Knowledge Center Wiki. The LexEVS Version 5.1 page offers an overview of the tool, guidance for installation and downloads, links to the user guides, service URLs, support forums, background information, links to presentations, related tools and additional resources. Specifically the user guides were updated for LexEVS 5.1 as well as streamlined those that are applicable for both 5.0 and 5.1.LexEVS Version 5.1 pageuser guides

8. Task 2: Implement LexEVS 5.1 Test Results Along with the test plan we have posted the test results for the 5.1 testing out on Gforge located under v5.1/QA or at https://gforge.nci.nih.gov/docman/index.php?group_id=491& selected_doc_group_id=5035&language_id=1. https://gforge.nci.nih.gov/docman/index.php?group_id=491& selected_doc_group_id=5035&language_id=1 Deployment BDA scripts were completed for each of the tiers and used to successfully deploy to Dev, QA, Stage and Production (in progress). All code is checked into NCI Gforge SVN and is available. Additionally all release files are ready for download and are available on Gforge at: https://gforge.nci.nih.gov/docman/index.php?group_id=491& selected_doc_group_id=5036&language_id=1. https://gforge.nci.nih.gov/docman/index.php?group_id=491& selected_doc_group_id=5036&language_id=1

9. Task 3: Update RRF Loader In order to support this task we captured requirements via Gforge items listed in the LexEVS 5.1 Scope document. These included Gforge #21716, #21717, #21718, #21719, #21721, #21722, #21723, and #21724. All code created to address these items is checked into Gforge SVN and has been deployed and tested through the NCI tiers. The design for this was documented in the Design and implementation plan at: https://wiki.nci.nih.gov/display/EVS/LexEVS+5.1+Design+Documen t#LexEVS5.1DesignDocument- MetathesaurausContent%28RRF%29DetailedDesign. https://wiki.nci.nih.gov/display/EVS/LexEVS+5.1+Design+Documen t#LexEVS5.1DesignDocument- MetathesaurausContent%28RRF%29DetailedDesign Most notably we’ve more than doubled the size of the Metathesaurus load with additional data yet due to loading enhancements the time to load has stayed the same.

10. Task 4: Query & Performance Enhancements In order to support this task we captured requirements via Gforge items listed in the LexEVS 5.1 Scope document. These included Gforge #21739, #21740, #21849, #21850, #21851, #21879, #21980, #21982. All code created to address these items is checked into Gforge SVN and has been deployed and tested through the NCI tiers. The design for this was documented in the Design and implementation plan at: https://wiki.nci.nih.gov/display/EVS/LexEVS+5.1+Design+Documen t#LexEVS5.1DesignDocument- QueryPerformanceandBehaviorEnhancementsDetailedDesign https://wiki.nci.nih.gov/display/EVS/LexEVS+5.1+Design+Documen t#LexEVS5.1DesignDocument- QueryPerformanceandBehaviorEnhancementsDetailedDesign Most significantly we were able to meet the browser team’s performance requirements to aid them in their implementation.

11. Task 5: Value Set Enhancements All code created for value set support is part of the baseline is checked into Gforge SVN. It has been deployed and tested through the NCI tiers. The design for this was documented in the Design and implementation plan at: https://wiki.nci.nih.gov/display/EVS/LexEVS+5.1+Design+Documen t#LexEVS5.1DesignDocument- ValueDomainSupportDetailedDesign. https://wiki.nci.nih.gov/display/EVS/LexEVS+5.1+Design+Documen t#LexEVS5.1DesignDocument- ValueDomainSupportDetailedDesign Most notably we also attended the Cross Cutting Workspace meeting in October 2009 and gave a presentation on value sets. This is available on the VKC at: https://cabig- kc.nci.nih.gov/Vocab/KC/index.php/LexEVS_Version_5.1#Pre sentations_and_demos.https://cabig- kc.nci.nih.gov/Vocab/KC/index.php/LexEVS_Version_5.1#Pre sentations_and_demos

12. Task 6: Improve LexEVS Loading Framework In order to support this task we captured the design for loading framework in the LexEVS 5.1 Design and Implementation Plan at: https://wiki.nci.nih.gov/display/EVS/LexEVS+5.1+Design+Documen t#LexEVS5.1DesignDocument- ImprovedLoaderFrameworkDetailedDesign.. https://wiki.nci.nih.gov/display/EVS/LexEVS+5.1+Design+Documen t#LexEVS5.1DesignDocument- ImprovedLoaderFrameworkDetailedDesign All code created to address these items is checked into Gforge SVN and has been deployed and tested through the NCI tiers. Custom Loading Feasibility Report and Recommendation Also included in the Design & Implementation Plan. Most notably we created more of a pluggable framework to provide a better framework for expanding LexEVS.

13. Task 7: Support LexWiki Integration with CDISC In order to support this task we engaged in weekly meetings with the CDISC group. We worked with them to identify their requirements and create the tools necessary for them to utilize the Wiki and evaluate its use. We created the CSHARE wiki to support this effort. The Wiki page is available at: http://informatics.mayo.edu/cshare/index.php/NCIM. http://informatics.mayo.edu/cshare/index.php/NCIM

14. Task 8: LexEVS 5.1 support of BDA In order to support this task we captured the BDA design/plan in the LexEVS 5.1 Design and Implementation Plan at: https://wiki.nci.nih.gov/display/EVS/LexEVS+5.1+Design+Documen t#LexEVS5.1DesignDocument-BDASupportDetailedDesign. https://wiki.nci.nih.gov/display/EVS/LexEVS+5.1+Design+Documen t#LexEVS5.1DesignDocument-BDASupportDetailedDesign BDA scripts were created for each of the tiers and were used to deploy successfully to each of the tiers. We’ve worked with the BDA team to identify gaps (in Gforge# 22887) in the LexEVS BDA certification which are documented as future recommendation to gain BDA certification.

15. Task 9: Maintain Current Versions of LexEVS In support of previous versions we’ve captured these items as Gforge trackers. We investigated each of these items and either fixed as part of the 5.1 development or deferred. These included the following Gforge items: 20896, 23468, 23561, 20651, 20652, 20653, 20665, 20684, 20797,21211, 21336, 21567, 21923, 23305, 23340, 23366, 24538, 24944 All code created to address these items is checked into Gforge SVN and has been deployed and tested through the NCI tiers. Additionally we’ve provided support for the caMOD team as they’ve migrated to 5.0. Any new feature recommendations have been captured as Gforge items marked for LexEVS 6.0.

16. Task 10: caBIG Boot Camp We met weekly with the NCI training team to develop, revise and finalize the materials for the LexEVS Boot Camp. All documentation is located at: https://gforge.nci.nih.gov/docman/index.php?group_id=196&select ed_doc_group_id=5225&language_id=1. https://gforge.nci.nih.gov/docman/index.php?group_id=196&select ed_doc_group_id=5225&language_id=1 We created 11 presentation, exercises, instructions, and supporting documentation for the boot camp. Additionally Craig Stancl, Scott Bauer, and Sridhar Dwarkanath delivered the training at the Rockville office over the course of 3 days. We had more than full attendance and great participation and feedback from the participants.

17. Task 11: Participate in Annual Meeting Attendance at the caBIG annual meeting included Craig Stancl, Kevin Peterson, Scott Bauer, Harold Solbrig and Traci St. Martin. We created a poster for LexEVS, which was displayed during the World Fair and we provided coverage for this to answer questions from users. This is posted on Gforge at: https://gforge.nci.nih.gov/docman/index.php?group_id=491&select ed_doc_group_id=5421&language_id=1. https://gforge.nci.nih.gov/docman/index.php?group_id=491&select ed_doc_group_id=5421&language_id=1 Additionally, the VKC created a LexEVS demo that was running during the boot camp and we have provided a link to this on our LexEVS 5.1 VKC Wiki page. LexEVS 5.1 VKC Wiki page

18. Summary 100% of Release Development Items were completed. In LexEVS 5.1, 11 bugs were fixed and included in baseline. In LexEVS 5.1, 21 feature requests were completed and included in baseline. In support of previous versions, 18 Gforge trackers were addressed. All deliverables and tasks listed in the Statement of Work have been addressed.

19. Demo of LexEVS 5.1 Demo provided by Sridhar/Scott

20. Q&A Any Questions?