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www.boldsystems.org BARCODE OF LIFE DATA SYSTEMS (BOLD) Riadul Mannan Biodiversity Institute of Ontario
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www.BOLDSYSTEMS.org
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1 Architect, 2 Hardware Engineers 4 Programmers, 4 Data Managers BOLD SYSTEMS 450 CPUs, 100TB storage Generator power Remote backup
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Barcode Records for Fungi, Protists, Plants and Animals 834.5Kspecimens, 69.6K species, 2.1K institutions : 5.1K users
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Features of BOLD Quality Assessments Primer Registry Alignment Viewer/Editor Integrated Help Taxon ID Tree Distance Summary Sequence Composition Nearest Neighbour Summary Accumulation Curves Multi-Marker ID Engine Bibliography Support Web Service API Workflow *AnalyticsIntegration
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Specimen Tissue Sample Extract DNA PCR Amplify Sequence Photograph Collection Data Web-Accessible Data and DNA Barcode The Analytical Chain
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Specimen Taxonomy Identifier IDs Institution Collectors Desc. Lat/Lon Country Collection Lab Data Trace Primers Audit Trail Marker 1 DNA Marker 2 Markers 3 Caption Metadata Copyright Image/Video Literature BOLD Data Model
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BOLD Multi-Marker Data Tag Cloud of markers Total Markers on BOLD : 45
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Project Management
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Data Management SpecimenSequence
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Data Management 12 3 4
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Primer Registry Total Primer – 633 Public – 325 Private – 308
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Data Analysis & Visualization
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Sequence Analysis - Taxon ID Tree
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Alignment Browser Features: Flexible labeling Variability of positions Mapping amino acids Future Features: Highlighting diagnostic position Mapping to secondary structures Web based sequence editing
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Identification System
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Managing Lab Data - LIMS
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LOCATING SAMPLES Owner Sample Type Sampleids Processids Keywords Microplate Label Sample Lookup
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Controlling Liquid Handling Robots
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PCR Success Report Gel image Sliced by system
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Management And Monitoring
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LIMS - Non Lab User
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Data Publication
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