1. Copyright © 2008 Pearson Education Inc., publishing as Pearson Benjamin Cummings Overview: The Smallest Unit of Evolution One misconception is that organisms evolve, in the Darwinian sense, during their lifetimes Natural selection acts on individuals, but only populations evolve Genetic variations in populations contribute to evolution

2. Copyright © 2008 Pearson Education Inc., publishing as Pearson Benjamin Cummings Variation Within a Population Both discrete and quantitative characters contribute to variation within a population Discrete characters can be classified on an either-or basis Quantitative characters vary along a continuum within a population

3. Copyright © 2008 Pearson Education Inc., publishing as Pearson Benjamin Cummings Modern Synthesis Mendel and Darwin come together 1940’s Many fields of study; paleontology, taxonomy, biogeography, population genetics

4. Copyright © 2008 Pearson Education Inc., publishing as Pearson Benjamin Cummings The Hardy-Weinberg equation can be used to test whether a population is evolving The first step in testing whether evolution is occurring in a population is to clarify what we mean by a population

5. Copyright © 2008 Pearson Education Inc., publishing as Pearson Benjamin Cummings A population is a localized group of individuals capable of interbreeding and producing fertile offspring Natural selection – the mechanism of evolution Gradualism – large changes evolve as an accumulation of small changes occurring over long periods of time

6. Copyright © 2008 Pearson Education Inc., publishing as Pearson Benjamin Cummings Gene Pools and Allele Frequencies A population is a localized group of individuals capable of interbreeding and producing fertile offspring Species Species interbreeding group that form offspring A gene pool consists of all the alleles for all loci in a population A locus is fixed if all individuals in a population are homozygous for the same allele Microevolution is a change in allele frequencies in a population over generations

7. Copyright © 2008 Pearson Education Inc., publishing as Pearson Benjamin Cummings Hardy-Weinberg Equilibrium The Hardy-Weinberg principle states that frequencies of alleles and genotypes in a population remain constant from generation to generation In a given population where gametes contribute to the next generation randomly, allele frequencies will not change Mendelian inheritance preserves genetic variation in a population

8. Copyright © 2008 Pearson Education Inc., publishing as Pearson Benjamin Cummings The Hardy-Weinberg Principle The Hardy-Weinberg principle describes a population that is not evolving If a population does not meet the criteria of the Hardy-Weinberg principle, it can be concluded that the population is evolving

9. Copyright © 2008 Pearson Education Inc., publishing as Pearson Benjamin Cummings Conditions for Hardy-Weinberg Equilibrium The Hardy-Weinberg theorem describes a hypothetical population In real populations, allele and genotype frequencies do change over time

10. Copyright © 2008 Pearson Education Inc., publishing as Pearson Benjamin Cummings The five conditions for nonevolving populations are rarely met in nature: – No mutations – Random mating ( no mate choice ) – No natural selection – Extremely large population size – No gene flow ( no migration )

11. Copyright © 2008 Pearson Education Inc., publishing as Pearson Benjamin Cummings Application of the Hardy Weinberg theorem Alleles p = frequency of the dominant allele (R) q = frequency of the recessive allele (r)

12. Copyright © 2008 Pearson Education Inc., publishing as Pearson Benjamin Cummings By convention, if there are 2 alleles at a locus, p and q are used to represent their frequencies The frequency of all alleles in a population will add up to 1 – For example, p + q = 1

13. Fig. 23-6 Frequencies of alleles Alleles in the population Gametes produced Each egg:Each sperm: 80% chance 80% chance 20% chance 20% chance q = frequency of p = frequency of C R allele = 0.8 C W allele = 0.2

14. Copyright © 2008 Pearson Education Inc., publishing as Pearson Benjamin Cummings Hardy-Weinberg equilibrium describes the constant frequency of alleles in such a gene pool If p and q represent the relative frequencies of the only two possible alleles in a population at a particular locus, then – p 2 + 2pq + q 2 = 1 – where p 2 and q 2 represent the frequencies of the homozygous genotypes and 2pq represents the frequency of the heterozygous genotype

15. Fig. 23-7-1 Sperm C R (80%) C W (20%) 80% C R ( p = 0.8) C W (20%) 20% C W ( q = 0.2) 16% ( pq ) C R C W 4% ( q 2 ) C W C W C R (80%) 64% ( p 2 ) C R C R 16% ( qp ) C R C W Eggs

16. Fig. 23-7-2 Gametes of this generation: 64% C R C R, 32% C R C W, and 4% C W C W 64% C R + 16% C R = 80% C R = 0.8 = p 4% C W + 16% C W = 20% C W = 0.2 = q

17. Fig. 23-7-3 Gametes of this generation: 64% C R C R, 32% C R C W, and 4% C W C W 64% C R + 16% C R = 80% C R = 0.8 = p 4% C W + 16% C W = 20% C W = 0.2 = q 64% C R C R, 32% C R C W, and 4% C W C W plants Genotypes in the next generation:

18. Copyright © 2008 Pearson Education Inc., publishing as Pearson Benjamin Cummings Three major factors alter allele frequencies and bring about most evolutionary change: – Natural selection – Genetic drift – Gene flow – Others … mutations, nonrandom mating, natural selection Concept 23.3: Natural selection, genetic drift, and gene flow can alter allele frequencies in a population

19. Copyright © 2008 Pearson Education Inc., publishing as Pearson Benjamin Cummings Natural populations can evolve at some loci, while being in Hardy-Weinberg equilibrium at other loci

20. Copyright © 2008 Pearson Education Inc., publishing as Pearson Benjamin Cummings Applying the Hardy-Weinberg Principle We can assume the locus that causes phenylketonuria (PKU) is in Hardy-Weinberg equilibrium given that: – The PKU gene mutation rate is low – Mate selection is random with respect to whether or not an individual is a carrier for the PKU allele

21. Copyright © 2008 Pearson Education Inc., publishing as Pearson Benjamin Cummings – Natural selection can only act on rare homozygous individuals who do not follow dietary restrictions – The population is large – Migration has no effect as many other populations have similar allele frequencies

22. Copyright © 2008 Pearson Education Inc., publishing as Pearson Benjamin Cummings The occurrence of PKU is 1 per 10,000 births – q 2 = 0.0001 – q = 0.01 The frequency of normal alleles is – p = 1 – q = 1 – 0.01 = 0.99 The frequency of carriers is – 2pq = 2 x 0.99 x 0.01 = 0.0198 – or approximately 2% of the U.S. population

23. Copyright © 2008 Pearson Education Inc., publishing as Pearson Benjamin Cummings Genetic Drift The smaller a sample, the greater the chance of deviation from a predicted result Genetic drift describes how allele frequencies fluctuate unpredictably from one generation to the next Genetic drift tends to reduce genetic variation through losses of alleles Small populations causing changes in the gene pool

24. Fig. 23-8-1 Generation 1 p (frequency of C R ) = 0.7 q (frequency of C W ) = 0.3 C W C R C R C W C R C R C W

25. Fig. 23-8-2 Generation 1 p (frequency of C R ) = 0.7 q (frequency of C W ) = 0.3 Generation 2 p = 0.5 q = 0.5 C W C R C R C W C R C R C W C W C R

26. Fig. 23-8-3 Generation 1 C W C R C R C W C R C R C W p (frequency of C R ) = 0.7 q (frequency of C W ) = 0.3 Generation 2 C R C W C W C R p = 0.5 q = 0.5 Generation 3 p = 1.0 q = 0.0 C R

27. Copyright © 2008 Pearson Education Inc., publishing as Pearson Benjamin Cummings The Bottleneck Effect The bottleneck effect is a sudden reduction in population size due to a change in the environment The resulting gene pool may no longer be reflective of the original population’s gene pool If the population remains small, it may be further affected by genetic drift Disasters – earthquakes, floods Hunting

28. Fig. 23-9 Original population Bottlenecking event Surviving population

29. Copyright © 2008 Pearson Education Inc., publishing as Pearson Benjamin Cummings Case Study: Impact of Genetic Drift on the Greater Prairie Chicken Loss of prairie habitat caused a severe reduction in the population of greater prairie chickens in Illinois The surviving birds had low levels of genetic variation, and only 50% of their eggs hatched

30. Fig. 23-10a Range of greater prairie chicken Pre-bottleneck (Illinois, 1820) Post-bottleneck (Illinois, 1993) (a)

31. Copyright © 2008 Pearson Education Inc., publishing as Pearson Benjamin Cummings The Founder Effect The founder effect occurs when a few individuals become isolated from a larger population Allele frequencies in the small founder population can be different from those in the larger parent population Ex- Darwins birds

32. Copyright © 2008 Pearson Education Inc., publishing as Pearson Benjamin Cummings Effects of Genetic Drift: A Summary 1.Genetic drift is significant in small populations 2.Genetic drift causes allele frequencies to change at random 3.Genetic drift can lead to a loss of genetic variation within populations 4.Genetic drift can cause harmful alleles to become fixed

33. Copyright © 2008 Pearson Education Inc., publishing as Pearson Benjamin Cummings Gene Flow Gene flow consists of the movement of alleles among populations - migration Alleles can be transferred through the movement of fertile individuals or gametes (for example, pollen) Gene flow tends to reduce differences between populations over time Gene flow is more likely than mutation to alter allele frequencies directly

34. Fig. 23-11

35. Copyright © 2008 Pearson Education Inc., publishing as Pearson Benjamin Cummings Gene flow can increase the fitness of a population Insecticides have been used to target mosquitoes that carry West Nile virus and malaria Alleles have evolved in some populations that confer insecticide resistance to these mosquitoes The flow of insecticide resistance alleles into a population can cause an increase in fitness

36. Copyright © 2008 Pearson Education Inc., publishing as Pearson Benjamin Cummings Mutation Mutations are changes in the nucleotide sequence of DNA Mutations cause new genes and alleles to arise Only mutations in cells that produce gametes can be passed to offspring Animation: Genetic Variation from Sexual Recombination Animation: Genetic Variation from Sexual Recombination

37. Copyright © 2008 Pearson Education Inc., publishing as Pearson Benjamin Cummings Mutation Rates Mutation rates are low in animals and plants The average is about one mutation in every 100,000 genes per generation Mutations rates are often lower in prokaryotes and higher in viruses

38. Copyright © 2008 Pearson Education Inc., publishing as Pearson Benjamin Cummings Nonrandom mating Select a mate with traits.. Proximity – mate with a close neighbor Inbreeding – mate with a closely related partner this decreases heterozygotes in a population and increases recessive traits Assortative mating – select partner with similar phenotype

39. Copyright © 2008 Pearson Education Inc., publishing as Pearson Benjamin Cummings Only natural selection consistently results in adaptive evolution Natural selection is not random it is the only cause of microevolution that adapts a population to its environment Natural selection is the only mechanism that consistently causes adaptive evolution

40. Copyright © 2008 Pearson Education Inc., publishing as Pearson Benjamin Cummings Natural Selection Differential success in reproduction results in certain alleles being passed to the next generation in greater proportions

41. Copyright © 2008 Pearson Education Inc., publishing as Pearson Benjamin Cummings A Closer Look at Natural Selection Natural selection brings about adaptive evolution by acting on an organism’s phenotype

42. Copyright © 2008 Pearson Education Inc., publishing as Pearson Benjamin Cummings Genetic Variation Variation in individual genotype leads to variation in individual phenotype Not all phenotypic variation is heritable Natural selection can only act on variation with a genetic component

43. Copyright © 2008 Pearson Education Inc., publishing as Pearson Benjamin Cummings Genetic Variations Variations are the substrate for natural selection Heritable Variations Discrete characters can be classified on an either-or basis Quantitative characters vary along a continuum within a population

44. Copyright © 2008 Pearson Education Inc., publishing as Pearson Benjamin Cummings Morphism Two or more discrete characters in a population The behavior of the morph is keyed to coloration Polymorph if two are more characteristics are highly noticeable Pg 436

45. Copyright © 2008 Pearson Education Inc., publishing as Pearson Benjamin Cummings Variation Between Populations Most species exhibit geographic variation, differences between gene pools of separate populations or population subgroups

46. Copyright © 2008 Pearson Education Inc., publishing as Pearson Benjamin Cummings Some examples of geographic variation occur as a cline, which is a graded change in a trait along a geographic axis Ex – body size increases with latitude reduce the surface area to volume conserve body heat Plants size decreases with elevation ex- tundra

47. Copyright © 2008 Pearson Education Inc., publishing as Pearson Benjamin Cummings Sources of genetic Variation Random mutations –rare but can enhance reproductive success ex- bacteria Sexual Recombination - crossing over, independent assortment, all unique genetic differences In organisms that reproduce sexually, recombination of alleles is more important than mutation in producing the genetic differences that make adaptation possible

48. Copyright © 2008 Pearson Education Inc., publishing as Pearson Benjamin Cummings The Preservation of Genetic Variation Various mechanisms help to preserve genetic variation in a population

49. Copyright © 2008 Pearson Education Inc., publishing as Pearson Benjamin Cummings Diploidy Diploidy maintains genetic variation in the form of hidden recessive alleles They will continue to exist even when harmful due to the heterozygote carriers

50. Copyright © 2008 Pearson Education Inc., publishing as Pearson Benjamin Cummings Balancing Selection/polymorphism Balancing polymorphism/selection occurs when natural selection maintains stable frequencies of two or more phenotypic forms in a population

51. Copyright © 2008 Pearson Education Inc., publishing as Pearson Benjamin Cummings Heterozygote advantage occurs when heterozygotes have a higher fitness than do both homozygotes Natural selection will tend to maintain two or more alleles at that locus Aa The sickle-cell allele aa causes mutations in hemoglobin (4%) but also Aa confers malaria resistance ( 32% ) Heterozygote Advantage

52. Copyright © 2008 Pearson Education Inc., publishing as Pearson Benjamin Cummings Hybrid vigor – crossbreed between 2 inbreed varieties that produce a more vigorous offspring Ex- in corn homozygous recessive has stunted growth and susceptible to disease inbreed has heterozygous advantage

53. Copyright © 2008 Pearson Education Inc., publishing as Pearson Benjamin Cummings In frequency-dependent selection, the fitness of a phenotype declines if it becomes too common in the population Selection can favor whichever phenotype is less common in a population Ex – butterflies mimic harmful butterflies but take on more coloration patterns which predators avoid if all were the same color ? Frequency-Dependent Selection

54. Copyright © 2008 Pearson Education Inc., publishing as Pearson Benjamin Cummings Neutral Variation Neutral variation is genetic variation that appears to confer no selective advantage or disadvantage For example, – Variation in noncoding regions of DNA – DNA fingerprint – Variation in proteins that have little effect on protein function or reproductive fitness

55. Copyright © 2008 Pearson Education Inc., publishing as Pearson Benjamin Cummings The Key Role of Natural Selection in Adaptive Evolution Natural selection increases the frequencies of alleles that enhance survival and reproduction Adaptive evolution occurs as the match between an organism and its environment increases Genetic variation and mutations are random - chance

56. Copyright © 2008 Pearson Education Inc., publishing as Pearson Benjamin Cummings Because the environment can change, adaptive evolution is a continuous process

57. Copyright © 2008 Pearson Education Inc., publishing as Pearson Benjamin Cummings Relative Fitness The phrases “struggle for existence” and “survival of the fittest” are misleading as they imply direct competition among individuals Reproductive success is generally more subtle and depends on many factors

58. Copyright © 2008 Pearson Education Inc., publishing as Pearson Benjamin Cummings Relative fitness is the contribution an individual makes to the gene pool of the next generation, relative to the contributions of other individuals Ex – Pink flowers have more offspring – more fit Selection coefficient – measurement of fitness Who ever has the most off spring has a fitness of 1 If the other individuals have half that amount fitness of.5 sterile 0 off spring fitness of 0

59. Copyright © 2008 Pearson Education Inc., publishing as Pearson Benjamin Cummings Quantitative characteristics are not analyzed

60. Copyright © 2008 Pearson Education Inc., publishing as Pearson Benjamin Cummings Directional, Disruptive, and Stabilizing Selection – Stabilizing selection favors intermediate variants and acts against extreme phenotypes Ex – infant birth weight 3-4 kg less mortality – Directional selection favors individuals at one end of the phenotypic range Ex – environmental change, bear size increases during glacial periods – Diversifying/ Disruptive selection favors individuals at both extremes of the phenotypic range Ex – 2 bill sizes in finches – mid size does not crack seeds well

61. Fig. 23-UN1 Stabilizing selection Original population Evolved population Directional selection Disruptive selection

62. Copyright © 2008 Pearson Education Inc., publishing as Pearson Benjamin Cummings Sexual Selection Sexual selection is natural selection for mating success It can result in sexual dimorphism, marked differences between the sexes in secondary sexual characteristics Ex – male vs female bird colors

63. Fig. 23-15

64. Copyright © 2008 Pearson Education Inc., publishing as Pearson Benjamin Cummings Why Natural Selection Cannot Fashion Perfect Organisms 1.Selection can act only on existing variations 2.Evolution is limited by historical constraints 3.Adaptations are often compromises 4.Chance, natural selection, and the environment interact