1. Today: Regulating gene expression in bactria Exam #1 T 2/17 in class Available: F and M 10-11am, noon-2pm, after 3pm T after 2pm

2. Combinations of 3 nucleotides code for each 1 amino acid in a protein. We looked at the mechanisms of gene expression, now we will look at its regulation.

3. Why change gene expression? Different cells need different components Responding to the environment Replacement of damaged/worn-out parts Fig 15.1

4. Two points to keep in mind: 1.Cellular components are constantly turned- over. 2.Gene expression takes time: Typically more than an hour from DNA to protein. Most rapidly 15 minutes. Fig 15.1

5. Gene expression can be controlled at many points between DNA and making the final proteins. Changes in the various steps of gene expression control when and how much of a product are produced. Fig 15.1

6. Blood clotting must happen within minutes

7. Fowler and Thomashow The Plant Cell, Vol. 14, 1675-1690, 2002 mRNA levels change in response to cold acclimation

8. Fig 1b DNA damage inhibits rRNA transciption The ATM repair pathway inhibits RNA polymerase I transcription in response to chromosome breaks Nature Vol 447 pg 730-734 (7 June 2007)

9. Gene expression can be controlled at many points between DNA and making the final proteins. Changes in the various steps of gene expression control when and how much of a product are produced. Fig 15.1

10. In bacteria, transcription and translation occur simultaneously. So most regulation of gene expression happens at transcription. Fig 13.22

11. Transcription initiation in prokaryotes: sigma factor binds to the -35 and -10 regions and then the RNA polymerase subunits bind and begin transcription Fig 12.7

12. Fig 14.3 Operon: several genes whose expression is controlled by the same promoter

13. Fig 14.3 E. coli lactose metabolism

14. Fig 14.4 In the absence of lactose, the lac operon is repressed.

15. Fig 14.4 Lactose binds to the repressor, making it inactive, so that transcription can occur.

16. Fig 14.5 Repression or induction of the lac operon

17. Fig 14.3 There is more to lac gene expression than repression

18. Fig 14.8 Glucose is a better energy source than lactose

19. Fig 14.8 Low glucose leads to high cAMP cAMP binds to CAP which increases lac operon transcription

20. Fig 14.8 High glucose leads to low cAMP low cAMP, CAP inactive, low lac operon transcription

21. Fig 14.3 The lac operon: one example of regulating gene expression in bacteria

22. The ara Operon products metabolize arabinose (a sugar)

23. In the absence of arabinose, the araC protein inhibits the expression of the ara operon. Fig 14.12

24. With arabinose, the araC protein activates transcription. Fig 14.12

25. The expression of micF inhibits the ompF gene at high osmolarity micF RNA does not code for a protein It is antisense RNA Fig 14.16

26. If the concentration of product 3 becomes high, it binds to enzyme 1 Thereby inhibiting its ability to convert substrate 1 into product 1 Feedback inhibition *This mechanism regulates the production of cysteine in E. coli

27. In bacteria, transcription and translation occur simultaneously. So most regulation of gene expression happens at transcription, but not all. Fig 13.22