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Published byMercy Wilkinson Modified over 9 years ago
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NCBI FieldGuide NCBI Molecular Biology Resources January 2008 Using Entrez
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NCBI FieldGuide WWW Access Entrez & BLAST
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NCBI FieldGuide Gene Homologene Entrez: Database Integration PubMed abstracts Nucleotide sequences Protein sequences 3-D Structure Word weight VAST BLAST Hard Link Neighbors Related Sequences Neighbors Related Sequences BLink Domains Neighbors Related Structures
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NCBI FieldGuide The Links Menu: Access to Neighbors and Links SNP GEO Gene PubMed Protein
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NCBI FieldGuide The Links Menu: Access to Neighbors and Links Neighbors: BLAST Link pre-computed BLAST Neighbors: BLAST Link pre-computed BLAST Neighbors: pre-computed CDD search Neighbors: pre-computed CDD search
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NCBI FieldGuide The Links Menu: Access to Neighbors and Links Neighbors Hard Links
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NCBI FieldGuide Database Searching with Entrez uUsing limits and field restriction to find human MutL homolog uLinking and neighboring with MutL uMapping SNPs onto structure
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NCBI FieldGuide Global NCBI (Entrez) Search colon cancer
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NCBI FieldGuide Global Entrez Search Results
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NCBI FieldGuide OMIM: Human Disease Genes Conserved Domain
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NCBI FieldGuide Nucleotide Sequences Nucleotide database now three parts EST expressed sequence tags GSS genome survey sequences CoreNucleotide everything else
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NCBI FieldGuide Core Nucleotide Results with Gene Preview New! Gene Preview more relevant results New! Gene Preview more relevant results New! Taxonomy Filters
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NCBI FieldGuide Advanced Search Options Tabs Taxonomy filter
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NCBI FieldGuide More Precise Nucleotides Search colon cancer[Title] AND nonpolyposis[Title] AND human[Organism] AND biomol_mrna[Properties] AND srcdb_refseq[Properties]
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NCBI FieldGuide Useful Field Restrictions [Title]: Definition line in GenBank / GenPept format shown in Summary format glyceraldehyde 3 phosphate dehydrogenase[Title] [Organism]: NCBI’s taxonomy. Organizing system for molecular databases mouse[organism]; green plants[organism]; Streptomyces coelicolor[organism] [Properties]: molecule type, location, database source biomol_mrna[properties]; biomol_genomic[properties]; gene_in_mitochondrion[properties]; srcdb pdb[properties] [Filter]: subsets of data, Entrez links all[filter]; nucleotide mapview[filter]; nucleotide omim[filter]
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NCBI FieldGuide Entrez Tip: Start Searches in Gene UniGen e Other Entrez DBs BLink Homologene: Gene Neighbors
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NCBI FieldGuide Gene Results nonpolyposis colon cancer AND human[Organism]
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NCBI FieldGuide Precise Results MLH1[Gene Name] AND Human[Organism] NCBI Taxonomy
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NCBI FieldGuide Organism Field: NCBI’s Taxonomy All molecular databases All molecular databases
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NCBI FieldGuide MLH1 Gene Record
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NCBI FieldGuide MLH1 Gene Record: Interactions and GO
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NCBI FieldGuide MLH1 Sequences
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NCBI FieldGuide MLH1 Gene Record: Sequences
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NCBI FieldGuide MLH1: Sequence Links
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NCBI FieldGuide Gene Table: Genomic Sequences
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NCBI FieldGuide Map Viewer: All Sequences Customizable NCBI Assembly EST Hits Gene Annotations Models Transcripts Download data and sequences
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NCBI FieldGuide MLH1 Homologs
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NCBI FieldGuide Synteny: Mammalian Genomes Albumin Gene Family
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NCBI FieldGuide Finding Homologs: HomoloGene Gene
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HomoloGene Cluster Gene Links Protein Links
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HomoloGene Downloader Protien mRNA Genomic Protien mRNA Genomic
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NCBI FieldGuide Finding Homologs 2: BLink Gene Protein
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NCBI FieldGuide BLink: BLAST Link (Best Hits) Redundant Proteins First 200 only BLAST Tomato homolog
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NCBI FieldGuide Finding Polymorphisms Gene
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NCBI FieldGuide GeneView: Variations Human MLH1 ATPase domain
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NCBI FieldGuide MLH1 Structure Model and Mapping Polymorphisms
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NCBI FieldGuide Related Structures: structure model
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NCBI FieldGuide Sequence Similar Structures Conserved Domain Conserved Domain Link to Structure Link to Alignment
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NCBI FieldGuide E. coli MutL Structure Cn3D viewer Conserved Domains
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NCBI FieldGuide Alignment Based Model : Mapping Polymorphisms Mg 2+ binding site Ile - Val
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NCBI FieldGuide Better Model: Conserved Domain Gene Protein Related Structures
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NCBI FieldGuide Better Model: Conserved Domain Mg 2+ binding site Ile – Val Position 32 Ile – Val Position 32
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