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ChemSpider – A Combination Platform of Free Chemistry Database, Free Prediction Engines and Crowdsourcing Environment Antony Williams University of Oregon, April 24 th 2013
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ChemSpider…. How many of you use ChemSpider already? ChemSpider… Over 28 million compounds Linked to 400 data sources Linked to patents, publications, data, spectra… You’ll hear more….
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An Overview How many of you are frequent users? How many of you are total novices? How many of you are librarians? Chemists? Cheminformaticians? What works well for you? What doesn’t work well for you? Your meeting. It will meander off target according to your needs
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A Question : What’s your interest in Public Compound DBs ? What public compound databases do you use? What are you looking to find? What proprietary databases do you presently use? What do you trust? Why are for-fee databases not enough? What issues do you have with free chemistry databases/resources online? What would the ideal solution provide????
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I want to know about “Vincristine”
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Vincristine: Identifiers and Properties
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Vincristine: Vendors and Sources
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Vincristine: Patents
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Vincristine: Articles
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CURATION Search “Vitamin H”
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“Curate” Identifiers
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The InChI Identifier
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Multiple Layers
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InChIStrings Hash to InChIKeys
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Vancomycin – Search the Internet
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Vancomycin Search Molecular SKELETON Search Full Molecule
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ChemSpider Interface
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ChemSpider SyntheticPages An online resource for synthetic procedures from users. A community sourced database Public peer-review and feedback for synthetic procedures New articles every week being deposited
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ChemSpider SyntheticPages
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ChemSpider Everywhere : Embed
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ChemSpider Everywhere: Wikibox
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ChemSpider Everywhere: Spectral Game
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ChemSpider Mobile
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Where to for ChemSpider? More databases coming online monthly – we add data daily! Looking for new collections ChemSpider is limited to “defined chemicals”. No support for: Polymers, Minerals, Markush structures
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Thank you Email: williamsa@rsc.org Twitter: @ChemConnector Personal Blog: www.chemconnector.comwww.chemconnector.com SLIDES: www.slideshare.net/AntonyWilliamswww.slideshare.net/AntonyWilliams
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