Presentation is loading. Please wait.

Presentation is loading. Please wait.

Expert PubMed/Medline Searching Skills Konstantina (Dina) Matsoukas, MLIS Head of Reference & Education Coordinator CUMC - Health Sciences Library

Similar presentations


Presentation on theme: "Expert PubMed/Medline Searching Skills Konstantina (Dina) Matsoukas, MLIS Head of Reference & Education Coordinator CUMC - Health Sciences Library"— Presentation transcript:

1 Expert PubMed/Medline Searching Skills Konstantina (Dina) Matsoukas, MLIS Head of Reference & Education Coordinator CUMC - Health Sciences Library hs-library@columbia.edu April 29, 2011

2 Page 2 Acknowledgements This project has been funded in whole or in part with Federal funds from the National Library of Medicine, National Institutes of Health, Department of Health and Human Services, under Contract No. NO1-LM-6-3501 with New York University. This series of training classes was developed by Konstantina (Dina) Matsoukas, Head of Reference and Education Coordinator of the Augustus C. Long Health Sciences Library at Columbia University.

3 Page 3 IFH Training Class Series 2011 Orientation to Health Sciences Information Resources (Feb 23@12pm) Comprehensive Searching of the Medical Literature (Mar 3@12pm) Smart Googling for Healthcare Professionals (Mar 10@12pm) Community Health and Demographic Data Sources (Mar 21@12pm) Keeping Up with the Medical Literature (Mar 29@12pm) Overview of Public Health Information Resources (Apr 6@12pm) Finding Evidence Based Information Resources (Apr 13@12pm) Expert PubMed/Medline Searching Skills (Apr 29 @12pm) Finding Patient Education Information Resources (May 3 @12pm) Searching for Data in Statistical Information Resources (May 11 @12pm)

4 Page 4 Topics covered in this session: 1.Anatomy of a PubMed record 2.Field searching in PubMed 3.Over-riding PubMed’s default settings 4.PubMed links to other NCBI resources

5 Page 5 Anatomy of a PubMed record

6 Page 6 PubMed – http://www.pubmed.govhttp://www.pubmed.gov

7 Page 7 PubMed – in process records

8 Page 8 PubMed – in process records (no MeSH)

9 Page 9 PubMed’s Display Setting Options

10 Page 10 Display Setting - MEDLINE (for in process record) In process records have not yet been fully indexed – so no MeSH headings

11 Page 11 LIMITing to MEDLINE records

12 Page 12 LIMITing to MEDLINE records

13 Page 13 PubMed - Indexed for MEDLINE

14 Page 14 Display Setting - MEDLINE

15 Page 15 MEDLINE record’s fields

16 Page 16 MeSH Grant info

17 Page 17 Grant info

18 Page 18

19 Page 19

20 Page 20

21 Page 21 MeSH, Substance name, Supplemental concept

22 Page 22

23 Page 23

24 Page 24

25 Page 25 Field searching in PubMed

26 Page 26 You are a family physician who regularly counsels your patients on family planning – specifically about what is a healthy interval of time for them to wait before starting to try having another baby. You generally recommend about 18 months or so to ensure the best outcomes for mother and baby. Your colleague tells you that there is a new study out of Columbia University published in the journal Pediatrics that now suggests that short time intervals between pregnancies might increase the chances of having a child born with autism. You wish to locate the PubMed citation to that study. How do you go about finding it quickly? Let’s try it out….Example Scenario

27 Page 27 PubMed – http://www.pubmed.govhttp://www.pubmed.gov

28 Page 28 http://www.ncbi.nlm.nih.gov/pubmed/citmatch

29 Page 29

30 Page 30

31 Page 31 Field searching via LIMITS

32 Page 32 Field searching via Advanced Search

33 Page 33

34 Page 34

35 Page 35

36 Page 36 All fields in the MEDLINE record are available to be searched on.

37 Page 37 Over-riding PubMed’s default settings Manual vs. Automatic

38 Page 38 Forcing a bound “phrase search”

39 Page 39 PubMed’s default is to AND terms

40 Page 40 Surround phrase in quotation marks

41 Page 41

42 Page 42 Combining subheadings with AND (instead of the default OR)

43 Page 43

44 Page 44 Add subheadings to search individually to AND

45 Page 45

46 Page 46

47 Page 47 Can always manually edit the query in this box!

48 Page 48

49 Page 49 When you do not want MeSH exploded…

50 Page 50 Dropping Explode function with truncation

51 Page 51

52 Page 52

53 Page 53

54 Page 54

55 Page 55 PubMed links to other NCBI resources The National Center for Biotechnology Information advances science and health by providing access to biomedical and genomic information. PubMed provides access and links to the integrated molecular biology and chemistry databases maintained by NCBI.

56 Page 56 http://www.ncbi.nlm.nih.gov/Database/ PubMed links to other NCBI resources

57 Page 57 Let’s try it out….Example Scenario You have the opportunity to attend the lecture where research will be discussed that may someday revolutionize the way heart disease is treated: Speaker: Eric Olson, Ph.D. Professor and Chair, Department of Molecular Biology Robert A. Welch Distinguished Chair Annie and Willie Nelson Professor Pogue Distinguished Chair in Research on Cardiac Birth Defects University of Texas Southwestern Medical Center at Dallas Lecture title: "MicroRNA Control of Heart Disease: From New Biology toward New Therapeutics"

58 Page 58

59 Page 59

60 Page 60

61 Page 61

62 Page 62

63 Page 63

64 Page 64 OMIM - http://www.ncbi.nlm.nih.gov/omimhttp://www.ncbi.nlm.nih.gov/omim

65 Page 65 http://www.ncbi.nlm.nih.gov/omim/611116

66 Page 66

67 Page 67

68 Page 68

69 Page 69

70 Page 70 Gene - http://www.ncbi.nlm.nih.gov/genehttp://www.ncbi.nlm.nih.gov/gene Gene integrates/curates info from various sources – useful for learning about genes and their associated disorders and phenotypes

71 Page 71 http://www.ncbi.nlm.nih.gov/gene/406990

72 Page 72

73 Page 73

74 Page 74 Questions? Konstantina (Dina) Matsoukas, MLIS Head of Reference & Education Coordinator CUMC - Health Sciences Library tel. 212-305-1411 km2056@columbia.edu km2056@columbia.edu Reference Desk: 212-305-3692 email: hs-library@columbia.eduhs-library@columbia.edu

75 Page 75 Further Reading PubMed Tutorial http://www.nlm.nih.gov/bsd/disted/pubmedtutorial/ NCBI Tutorials http://www.ncbi.nlm.nih.gov/education/tutorials/


Download ppt "Expert PubMed/Medline Searching Skills Konstantina (Dina) Matsoukas, MLIS Head of Reference & Education Coordinator CUMC - Health Sciences Library"

Similar presentations


Ads by Google