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Public Health Case Reporting - CSTE TIG Lab Vocabulary Review May 3rd Week – Viral Diseases CRSWg, LMCoP, VMCoP May 13 th, 2010 10/12/20151.

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Presentation on theme: "Public Health Case Reporting - CSTE TIG Lab Vocabulary Review May 3rd Week – Viral Diseases CRSWg, LMCoP, VMCoP May 13 th, 2010 10/12/20151."— Presentation transcript:

1 Public Health Case Reporting - CSTE TIG Lab Vocabulary Review May 3rd Week – Viral Diseases CRSWg, LMCoP, VMCoP May 13 th, 2010 10/12/20151

2 Archive of - 1 st and 2 nd Meeting Lab Vocabulary Review 10/12/20152 Hyperlink: http://www.phconnect.org/profiles/blogs/call-for-volunteers-reviewhttp://www.phconnect.org/profiles/blogs/call-for-volunteers-review

3 Scope for 3r d Week of CSTE TIG - Lab Vocabulary Review 10/12/20153 Focus mainly on HIV and Influenza

4 Spreadsheet Overview 10/12/20154 Note: Includes only the 2 nd Week Bacterial Diseases Lab Vocabulary

5 CSTE Position Statement  CSTE Position Statement not published in the CSTE website for the following conditions: –Acute Hepatitis B –Chronic Hepatitis B  Post the above mentioned CSTE position statements in www.phconnect.org www.phconnect.org  Need to find about the status of the above mentioned position statements (Did not review last year, Planning to review this year, etc..)  Reconcile the CSTE Position Statement and CSTE TIG criteria for the following conditions: –Hantavirus –HIV infection –Dengue Fever 10/12/20155

6 Dengue Fever - CSTE Lab Criteria Conditionality 10/12/20156

7 Hantavirus Pulmonary Syndrome 10/12/20157  Pathology Impression  Reconcile the Lab Criteria to CSTE TIG LOINC mappings

8 Hantavirus Pulmonary Syndrome 10/12/20158 * increased circulating atypical lymphocytes or immature myeloid cells

9 Hepatitis C - Lab Test + Date of Onset (Timing) 10/12/20159

10 Hepatitis C - Negative Test Criteria 10/12/201510 Assumption: Hepatitis C TIG File without any “Acute” or “Chronic” must have been related to Chronic.

11 Hepatitis C - Acute and Chronic Lab Criteria (same) 10/12/201511 Acute Hepatitis C Chronic Hepatitis C CSTE – Owner of Lab Criteria and could assign the ID’s for Lab Criteria

12 Human Rabies 10/12/201512 No LOINC / SNOMED Code

13 Hepatitis B Chronic 10/12/201513 SNOMED Test Result – Pre-coordinated with Agent and Component

14 HIV Infection  Review the CSTE Position Statement and CSTE TIG –Adult and Pediatric –Qualitative and Quantitative 10/12/201514 HIV CSTE Position Statement Review the CSTE TIG for HIV Discuss with PHLIP regarding HIV mapping

15 HIV Infection  PHLIP Feedback (Riki):  HIV TIG (Qualitative) tests DNA/RNA detection - LOINCs are all qual, no result codes included in one iteration, but coded to positive in the other - LOINCs are the same  HIV TIG Culture result - critrion reads any, no SNOMED cocdes assigned here, but lab cirterion cited in the spreadsheet is pos resut  HIV TIG Culture result - second criterion reads pos result - LOINC is Nom and result code is coded as HIV  HIV TIG Culture result criterion exisits twice with same set of LOINC codes 10/12/201515

16 Novel Influenza  Novel Influenza - Chest X-Ray Lab Tests mapped to "Non-subtypeable influenza A virus determined by WHO collaborating laboratory.”  Novel Influenza - Rapid Diagnostic Tests Criteria - No mapping to LOINC / SNOMED  Novel Influenza - Influenza A H1, Influenza A H3 do not have any mapping to LOINC / SNOMED  PHLIP Feedback: –Novel Influenza - Influenza A H1, Influenza A H3 and H1 2009 pandemic do not have any mapping to LOINC / SNOMED (Have QL LOINCs now and PLR codes for nom Flu subtype test results –Novel Influenza - shouldn't it be Flu A unsubtypable as result to report - exists as PLR code only 10/12/201516

17 Novel Influenza  SNOMED CT – Influenza A VirusInfluenza A Virus 10/12/201517

18 Polio 10/12/201518 NND Codes – Paralytic and Non-Paralytic Polio. What is the scope of CSTE position Statement?

19 SARS 10/12/201519 SARS Coronavirus – SNOMED Results

20 Measles Virus 10/12/201520 SNOMED Result - Measles Virus - Genotype

21 Recommendation Letter to CSTE about CSTE TIG Lab Vocabulary  Include Changes that needs to be made in CSTE position Statements  Mention the issues that are related to lab domain which would be addressed by the lab community of practice and SDO (LOINC, SNOMED).  CSTE lab Criteria Interpretation issues  Maintenance of the CSTE lab Criteria –?? Unique identifier for the lab criteria –Centralized repository of data elements – Maintained by CSTE 10/12/201521


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