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WANG HANLU 2015.9.6 Advance in research of aptamers and related drugs
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Aptamer Aptamers are oligonucleotides, such as RNA and single-strand deoxyribonucleic acid (ssDNA) or peptide molecules that can bind to their targets with high affinity and specificity due to their specific three-dimensional structures. Advantages of aptamers Aptamers are produced chemically in a readily scalable process Chemical production process is not prone to viral or bacterial contamination Non-immunogenic Smaller size allows more efficient entry into biological compartments
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The annual trends in the number of publications of aptamers-related research. The term “aptamer” has been utilized for literature search on Thomson Reuters Web of Science. Aptamers in research
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ELLINGTON AD , SZOSTAK JW . In vitro selection of RNA molecules that bind specific ligands [ J]. Nature , 1990 , 346 ( 6287 ): 818 - 822 . TUERK C , GOLD L . Systematic evolution of ligands by exponential enrichment RNA ligands to bacteriophage-T4 DNA polymerase [ J] . Science , 1990 , 249 ( 4968 ): 505 - 510 . SELEX (Systematic evolution of ligands by exponential enrichment) First reported by both Gold’s group and Szostak’s group in 1990 SELEX experiment: a random sequence oligonucleotide library is synthesized that spans 20–100 residues in length, and each nucleotide is flanked by constant sequences. The pool will frequently contain between 1 × 10 13 to 1 ×10 15 members.
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Aptamer discovery process
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Song, K. M. Aptamers and their biological applications. Sensors (Basel).12, 612-31(2012) Various application fields of aptamers
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Aptamers in the Clinical Pipeline
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JELLINEK D,GREEN LS,BELL C,et al. Inhibition of receptor-binding by high-affinity RNA ligands to vascular endothelial growth-factor[J]. Biochemistry,1994,33 ( 34 ) : 10450 - 10456. RUCKMAN J,GREEN LS,BEESON J,et al. 2'-fluoropyrimi- dine RNA-based aptamers to the 165-amino acid form of vascular endothelial growth factor ( VEGF ( 165 ) ) -inhibition of receptor binding and VEGF-induced vascular permeability through interac- tions requiring the exon 7-encoded domain[J]. J Biol Chem, 1998,273( 32) : 20556 - 20567. D‘AMICO DJ,MASONSON HN,PATEL M,et al. Pegaptanib sodium for neovascular age- related macular degeneration-Two-year safety results of the two prospective, multicenter, controlled clinical trials[J]. Ophthalmology,2006,113( 6) : 992 - 1001. Pegaptanib——anti-VEGF aptamer
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Schematic representation of the design of the activatable aptamers probe (AAP) Optical Molecular Imaging with Aptamer-Based Probes Shi H., He X., Wang K., Wu X., Ye X., Guo Q., Tan W., Qing Z., Yang X., Zhou B. Activatable aptamer probe for contrast-enhanced in vivo cancer imaging based on cell membrane protein-triggered conformation alteration. Proc. Natl. Acad. Sci. USA. 2011;108.
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Optical Molecular Imaging with Aptamer-Based Probes Shi H., He X., Wang K., Wu X., Ye X., Guo Q., Tan W., Qing Z., Yang X., Zhou B. Activatable aptamer probe for contrast-enhanced in vivo cancer imaging based on cell membrane protein-triggered conformation alteration. Proc. Natl. Acad. Sci. USA. 2011;108.
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Optical Molecular Imaging with Aptamer-Based Probes Shi H., He X., Wang K., Wu X., Ye X., Guo Q., Tan W., Qing Z., Yang X., Zhou B. Activatable aptamer probe for contrast-enhanced in vivo cancer imaging based on cell membrane protein-triggered conformation alteration. Proc. Natl. Acad. Sci. USA. 2011;108.
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Aptamer-mediated drug delivery Omid C. Farokhzad, Jianjun Cheng, Benjamin A. Teply, et al. Targeted nanoparticle-aptamer bioconjugates for cancer chemotherapy in vivo. Proc. Natl. Acad. Sci. USA. 2006;103.
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Aptamer-mediated drug delivery
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Problems Time-consuming in selection? CE-SELEX, automated screening technology Easy to degrade in vivo? Modified nucleoside, Capping, PEGlyation , … How to illustrate the binding structure? NMR , … Not mature for application?
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