1. Cytoscape Introduction 吳 信 宏, Hsin-Hung Wu eastc228@iis.sinica.edu.tw Laboratory of System Biology and Network Biology Institute of Information Science, Academic Sinica Department of Computer Science and Information Engineering, NTU July 23, 2009

2. Introduction (1/3)

3. Introduction - Input (2/3) Supports many standards Interoperability

4. Introduction - Layout (3/3)

5. Usage Cytoscape  http://www.cytoscape.org/ http://www.cytoscape.org/ Java SE (5.0 or 6.0)  http://java.sun.com/javase/downloads/index.jsp http://java.sun.com/javase/downloads/index.jsp

6. Download Cytoscape (1/3) The latest version

7. Download Cytoscape (2/3) Fill in information about yourself

8. Download Cytoscape (3/3) Depends on your OS

9. Download Java SE (1/3) JRE

10. Download Java SE (2/3) Depends on your OS

11. Download Java SE (3/3) Download it~!

12. Start the Cytoscape

13. Import Data (1/3) Different import procedure

14. Import Data (2/3) Select data from files Set the corresponding columns

15. Import Data (3/3)

16. View the Network (1/4)

17. View the Network (2/4) Different layout styles

18. View the Network (3/4)

19. View the Network (4/4) More layout setting

20. A Beautiful Example Colorful ~

21. Plug-in

22. Try it ~ SampleData Cytoscape 2.6.3 JRE 6