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Workshop Visualization of Biological Complexes October 11-12, 2003.

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Presentation on theme: "Workshop Visualization of Biological Complexes October 11-12, 2003."— Presentation transcript:

1 Workshop Visualization of Biological Complexes October 11-12, 2003

2 Goals Review technology in visual biology Define future needs in visualization of biological complexes in research labs Define challenges & solutions in sharing 3-D structures of complexes in public domain What types of resources are needed? What are the funding options to meet the research challenges in visual biology and bioinformatics?

3 9:00 am Chiu: Welcome and Introduction 9:15 am Berman Group: Challenges in Visualization of Complexes in PDB 10:05 am Coffee break 10:30 am Chiu Group: Structural Features Extraction and Animation of Complexes 11:20 am Sali Group: Modeling the Structures of Macromolecular Assemblies 12:10 pm Lunch Break

4 1:30 pm Bajaj Group: Quantitative Visualization of Static and Dynamic Biological Complexes 2:20 am David Goodsell, Michel Sanner, Art Olson: Representation, Implementation and Interaction: Challenges for Macromolecular Assemblies 3:10 pm Break 3:30 pm Ferrin Group: Multiscale Structural Modeling with UCSF Chimera and Data Quality Problems in Virus PDB Models 4:20 pm Carazo Group: Alternative Representation of Complexes

5 5:10 pm Chiu: General Discussions 6:00 pm Happy Hour 6:30 pm Dinner in the East Ocean Restaurant, 3199 Powell, Emeryville

6 October 12 (Sunday) 8:45 am Moreland Group: MBT - A Java Toolkit for Molecular Visualization 9:35 am Delano Group: Issues Surrounding the Use of Open-Source PyMOL to Visualize Large Complexes 10:25 am Break 11:00 am Berman: General Discussions and Possible Future Collaborations 12:30 pm End

7 Few Logistics Meals Room Charge Travel reimbursement Wireless Connection

8 Summary Problems in annotating complexes in PDB New user interface for visualization to make visualization for “dummy” New algorithms for quantitative visualization and representation Cryo-EM (4-20 A) structures are expanding and need institutionalized archiving Modeling tools are maturing to provide informative models for biologists Continue an annual meeting and periodic video conferencing Organize a special issue of papers in a journal

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