1. Biodiversity Data Journal: mobilization, reuse and integration of small data Lyubomir D. Penev 1,3, Teodor A. Georgiev 3, Pavel E. Stoev 2,3, Jordan Bisserkov 3, Laurence Livermore 4, Jeremy Miller 5, David M. Roberts 4 & Vincent S. Smith 4 ViBRANT pensoft.net/journals/bdj 1 Institute for Biodiversity and Ecosystem Research, Bulgaria 2 National Natural History Museum, Bulgaria 3 Pensoft Publishers 4 The Natural History Museum, UK 5 NCB Naturalis, Leiden, The Netherlands Modern taxonomy as a cyberscience meeting 24-25 July 2013 – Crete, Greece

2. Primary data Drawings: slavenapeneva.com

3. Primary data Publishing and sharing of primary data RE-USE of CONTENT

4. 4 of Data publishing becomes increasingly important and already affects the policies of the world’s leading science funding frameworks and organizations. The concept of “open data” is described in the Protocol for Implementing Open Access Data, the Open Knowledge/Data Definition, the Panton Principles for Open Data in Science, and the Open Data Manual. 27

5. 5 of White House Office of Science and Technology Policy (OSTP) created the Big Data Research and Development Initiative started 29 March 2012 Directive of the Council of Europe recognising “the strategic importance for Europe’s scientific development of open access to scientific information” On 17th July 2012, the European Commission outlined measures to improve access to scientific information produced in Europe in a Communication and a Recommendation to the Member States. 27

6. 6 of open data increases transparency and the overall quality of science published data can be verified by other researchers it can be integrated with other datasets it increases the potential for interdisciplinary research duplication of data-collecting efforts and associated costs will be reduced published data can be indexed and made discoverable 27 Incentives for authors and institutions to publish data

8. After submission (summary) EOL Dryad GBIF PubMed Central and more... WRITING REVIEWING PUBLICATION

9. Life cycle of data published in the BDJ BIODIVERSITY MANUSCRIPT Occurrence data Genome dada Image galleries Morphometric data Environmental data Phylogenetic data Any other data XML MARK UP Structured text (data!) ARTICLES Occurrence data Taxon names Taxon treatments Plazi BHL Wiki COL Biblio- graphies

10. What will BDJ publish? Single taxon treatments and nomenclatural acts Local or regional checklists Sampling reports and occasional inventories Habitat-based checklists and inventories Ecological and biological observations Single identification keys Biodiversity-related databases, including genomic, ecological and environmental data (data papers) Biodiversity-related software tools

11. Choose article template

12. Authors can choose the review type

13. Classifications

15. Add author

18. Taxon treatment: new species

19. Taxon treatment: import material data

20. Taxon treatment: upload of images

21. Structure of the checklist filed

22. External links

25. Import of checklists through Darwin Core template

30. Construction of key

31. Key preview

32. Key features Biological Codes compliant article templates No lower/upper limit of manuscript size Semantically enhanced “articles of the future” Integrated with GBIF, EOL, Dryad, Scratchpads, etc. ALL DATA MATTERS!

33. Structured data Publish, cite, disseminate & archive data EOL Dryad GBIF Wiki Species-Id PubMed Plazi Select, describe & annotate data Publication module Automated import of treatments from Scratchpads and author’s own databases

34. Automated registration MANUSCRIPT SUBMISSION MANUSCRIPT ACCEPTED XML Response ARTICLE PUBLISHED Taxon name available/valid (effectively published) XML article metadata XML Query Peer review

35. Manuscripts are automatically formatted during the writing process Avoids layout stage, decreases costs and efforts!

36. No installation! Just register and go!

38. NO Author Guidelines! The tool guides you!

39. Thank you for your attention! ViBRANT Lyubomir Penev Vince Smith Dave Roberts Teodor Georgie v Modern taxonomy as a cyberscience meeting 24-25 July 2013 – Crete, Greece We Open Access! Laurenc e Livermo re Jeremy Miller