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Efficiency of data presentation & utilization in state soybean variety trials Lingxiao (Ling) Zhang Delta Research and Extension Center Mississippi State University Tampa, FL. 01-28-2010
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State Soybean Variety Test Procedures Variety collection Experimental design Find locations &locations cooperators PreparationPlanting Data collection Harvest Data analysis Result Report Recommendations OVT Group Producers Seed company Uni. researcher Extension agent
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Hard copy Internet -htm -pdf - xls - database Field Day Report Methods for OVT
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Soybeans Variety Test Results in Illinois
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SOYVA 2009SOYVA 2009 - Soybean Variety Selection Program (SOYVA) is a computerized soybean variety selection program (U-AR).
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Data Utilization from OVT An Internet-base soybean variety trial database for research, extension and production Deltasoy DatabaseModeling Internet Information system
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Diagram of a three-tier of architecture of a Web-based database
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Entity relationship diagram of parameters in Deltasoy database.
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Dependency diagram of parameters in Deltasoy database.
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Variety selection interface of Deltasoy
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An example of Deltasoy result table
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Multi-year => result
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Multi-year => single variety)
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Deltasoy – Home page
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Variety comparison of Deltasoy Database
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“Disease info” of Deltasoy Database
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Soypheno
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“SoyPheno” of Deltasoy Database
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SoyPheno - search results & recommendation
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A database for national soybean OVT? Soyrus Soy-r-us
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Who gets benefit from Soyrus? Crop grower Seed company Private consultant County agent University researcher
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How can a database help? Multi-year Multi-location Comparing different Variety or systems Add more function for analysis (weighted) Vt = (a) P1 + (b) P2 + (c) P3 + … Long-term data accumulation Initial other research topics
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Modify Soybean MG Adaptation Zones (Scott and Aldrich, 1970)
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Test site distribution of OVT SD MS MI IL
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Materials and Methods Data sources - State soybean variety trials - All soybean producing states Data criteria - Most of irrigated test - Yield over 45 bu/A (3030 kg/h) - 30 varieties or more in a test - Planting date within certain range
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(Locations selected for creating adaptive zones of soybean MG in the USA) Map construction
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Zones of optimum soybean maturity groups for maximum yield in the US (Figure was created by the Kriging interpolation method using variety trial data from 1998 to 2003 )
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Modified zone of optimum soybean maturity groups for maximum yield in the US
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Application of OVT data Growth stage and maturity prediction at all location? - Data source – latitude, PD & MD - Method – modeling (regression, ANN, etc.)
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Information links to soybean producing states in the USA
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Diagram of 3-layers of back propagation ANN
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A sigmoid function and calculation process for one node.
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Potential researchable topics using an OVT database * Protein & oil content? - Type of variety - Year trend under diff. envion. conditions * Yield trend? - historical data may tell real genetic gain? * Environmental effects on yield? - G x E - Soil type, - Irrigation, disease, insect
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Major Problems Funding - USB ? - Other agents? Different focuses for each state - Focus on the similarity Need action - Form a committee
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Parameters in database Common Variety name MG (RM) Yield Plant height Maturity Date Location Irri. vs. N-iir. Conv. vs. RR (Planting Date) ….. May be Varied Shattering score Lodging score Protein content Oil content ….. Genetic controlled Flower& Pod Pubescence Disease …..
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Other Problems Update information? - Variety turn over past - Disease resistance Other Website/Server maintenance - Web submission
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A Diagram of Soyrus for Soyean Production
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Thank You ! Question?
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Field Day – what makes up the lunch?
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Comparison summary The adaptive zone for one MG is about 3-4 degrees latitude, wider than it was suggested, especially for mid-late MGs (>III) in the south. VI is the latest MG adapted in the US for the optimum yield, and MG VII-VIII are not optimum MGs for the US (if not count FL) Late maturity (VI) soybeans adapted to East coast rather than the Midsouth due to available late precipitation. 00 -
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Recent Soybean Variety Turn-over Ratio Data source: popular conventional and roundup ready soybean varieties collected by NCST (n=245)
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Zones and planting date divided for soybean producing states involved in MG map construction RegionLatitudeStates includedPlanting date North> 43 o ND, SD, MN, WI, MI.5/10 – 6/20 Central43 o -36 o NE, IA, KS, MO, IL, IN, OH, PA, WV, VA, NJ, DE, MD, NY. 4/25 – 6/15 South<36 o OK, AR, TX, LA, MS, AL, GA, SC, TN, NC, KY, 4/10 – 6/10
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Materials and Methods (cont.) Determination of the values of optimum maturity groups - regression method: yield vs. MG - maximum yield weighted average
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Determination of MG values using regression
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Calculation of optimum values of MG using weighted yields V mg = w*x/ w = (w 1 x 1 +w 2 x 2 +…+w 30 x 30 )/ (w 1 +w 2 +…w 30 ) where, w is the weighing fact, the percentage of yield relative to the maximum yield, and x is the value of maturity group. VarietyMG x Yield (bu/A) Weight w (%) 1. H55455.587.1100 2. R9212944.985.998.6 3. A59795.984.897.4 ….…. ….…. ….…. ….…. 28. DP53545.371.381.9 29. DG35765.771.381.9 30. HX5174625.170.881.3
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