1. Wiki course ela.hunt@systemsx.ch

2. Course Outline Motivation for using a wiki – examples and common sense rules – SyBIT wiki – Ralf’s wiki (WingX) – BattleX wiki – iBRAIN (SyBIT project) Editing in action – Make your own page 2wiki course Lausanne, Jan 2011

3. Questions Please ask questions any time you feel like it wiki course Lausanne, Jan 20113

4. wiki course Lausanne, 20 th Jan 20114 Left – menus, logos, search Right – links Middle – content with links

5. wiki course Lausanne, Jan 20115 Personal page: No menu on the left, just editing operations available Picture, address, content below Top right – access to personal settings

6. Finding people via the dashboard wiki course Lausanne, Jan 20116

7. 7 Dashboard Email for help List of wikis (spaces) Info on recent updates Access to people pages search

8. Ralf’s personal space - Ralf is in charge, gives access to individuals as required, access control can be different for each page wiki course Lausanne, Jan 20118

9. Security model Hierarchical, children pages inherit security from parent page Page is public, unless we impose edit and view restrictions Restrictions/lists of allowed users apply to individuals or groups Nominated admins define security for the group wiki wiki course Lausanne, Jan 20119

10. Group listing, the listed group has access wiki course Lausanne, Jan 201110

11. wiki course Lausanne, Jan 201111 Personal content controlled by Ralf -Navigation bar on the left -Content in the main pane -Search field -Structure left bottom -Recent updates right bottom

12. Ralf’s protocols – links to attachments wiki course Lausanne, Jan 201112

13. Ralf’s macros page and its children wiki course Lausanne, Jan 201113

14. wiki course Lausanne, Jan 201114

15. wiki course Lausanne, Jan 201115

16. Ralf’s summary of his results wiki course Lausanne, Jan 201116

17. wiki course Lausanne, Jan 201117

18. wiki course Lausanne, Jan 201118

19. wiki course Lausanne, Jan 201119

20. A group or group leader establishes rules/policies wiki course Lausanne, Jan 201120

21. wiki course Lausanne, Jan 201121

22. Templates wiki course Lausanne, Jan 201122

23. Example wiki wiki course Lausanne, Jan 201123

24. Integrating excel docs wiki course Lausanne, Jan 201124

25. Showing powerpoint/pdf wiki course Lausanne, Jan 201125

26. Showing word docs wiki course Lausanne, Jan 201126

27. Hands-on session with examples New pages Attachments Syntax Macros Documentation wiki course Lausanne, Jan 201127

28. New page – two options (depending on your layout) Edit page and add [My New Page], save, click on it to edit wiki course Lausanne, Jan 201128

29. Attachments – getting to them wiki course Lausanne, Jan 201129

30. wiki course Lausanne, Jan 201130

31. Using attachments They can be shown as links to files (protocols for instance) They can be included within a page (pdf, powerpoint, excel, word), using macros wiki course Lausanne, Jan 201131

32. Macros – finding them wiki course Lausanne, Jan 201132 {macro}

33. Links wiki course Lausanne, Jan 201133 [link txt|link]

34. Images 1 wiki course Lausanne, Jan 201134 !image1.png!

35. Images 2 wiki course Lausanne, Jan 201135

36. Syntax wiki course Lausanne, Jan 201136

37. wiki course Lausanne, 20th Jan 201137 Table H3. Effect of RNAo..... || RNAi ||... ||.. Grey shading | entry | entry | | {color:red} entry {color} |.... For complex formatting, see documentation link

38. Task 1 Create a personal page if you do not have one yet Add your picture, address, details Attach your latest paper, add link to it, and url pointing to PubMed entry, could also show pdf/word doc in a page Create a table of your papers where beside the latest your last but one paper is also shown Restrict access to your page (edit page, edit restrictions at the bottom of the page) wiki course Lausanne, Jan 201138

39. Space admin wiki course Lausanne, Jan 201139

40. Task 2: Permissions – edit them wiki course Lausanne, Jan 201140

41. Themes wiki course Lausanne, Jan 201141

42. Navigation wiki course Lausanne, Jan 201142

43. SyBIT Navigation page wiki course Lausanne, Jan 201143 ||* [SyBIT Home|SyBIT:] || |h1. [About / Organization|Organization and Structure]| |h1. [Projects]| |h1. [Project Application]| |h1. [Software & Tools|Software and Tools]| || * [Documents] || |h1. [Blueprint]| |h1. [Guidelines|Internal Guidelines]| ||* [Communities]|| |h1. [Genomics]| |h1. [Proteomics]| |h1. [Screening]| |h1. [IT Infrastructure|IT Infrastructure]|

44. Summary Define your rules of conduct and the structure the group will stick to Use wiki as your repository for work in progress – I do not back up my laptop any more, as most work is on the wiki Create your home page, learn how to edit Ask me or helpdesk for further help or training If new features are needed, ask me for those and SyBIT can add them (new macros) wiki course Lausanne, Jan 201144