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Glycopeptide MS/MS Spectra Supplemental Data 2
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gi|310722811Vacuolar invertase 1 [Gossypium hirsutum] R.LFLFNNASGVNVK.A + Deamidated (NQ)1423.8701 01 Supplemental Data 2
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K.ITGSIPAGLTDLELQFMNVSYNR.L + Deamidated (NQ) 1423.8701 gi|33469564Polygalacturonase-inhibiting protein [Gossypium barbadense]02 Supplemental Data 2
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K.TVDQYYFGGNNSIR.G + Deamidated (NQ)1634.8681 gi|224065294Predicted protein [Populus trichocarpa]03 Supplemental Data 2
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K.KDENMAGEWNYTSGK.W + Deamidated (NQ); Oxidation (M)1746.8402 gi|147834599Hypothetical protein VITISV_010536 [Vitis vinifera] Calreticulin 04 Supplemental Data 2
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R.TLANSNLPGFNNTLDR.L + Deamidated (NQ)1747.8700 gi|19569160Apoplastic anionic gaiacol peroxidase [Gossypium hirsutum]05 Supplemental Data 2
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R.TNLTASGPRPNPQGSYHY.G + Deamidated (NQ)1960.8028 gi|16648889Unknown protein [Arabidopsis thaliana] Pectinesterase 06 Supplemental Data 2
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R.DELDFEFLGNR.T + Deamidated (NQ)1355.5002 gi|2244732Endo-xyloglucan transferase [Gossypium hirsutum]07 Supplemental Data 2
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R.QYAGYVTVNESHGR.A + Deamidated (NQ)1581.6491 gi|102139937Serine carboxypeptidase (carboxypeptidase D), putative [Musa acuminata] 08 Supplemental Data 2
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K.AAESWVHDNVTR.Y + Deamidated (NQ)1385.7208 gi|296085019Unnamed protein product [Vitis vinifera] Glucan endo-1,3-beta-glucosidase 9-like 09 Supplemental Data 2
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R.VPTVNVSVVDLTVR.L + Deamidated (NQ)1498.7457 gi|311690856Putative glyceraldehyde 3-phosphate dehydrogenase [Ophrys sphegodes] 10 Supplemental Data 2
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R.MLLNDANSTGEKK.T + Deamidated (NQ); Oxidation (M)1437.5909 gi|34395384Putative tetratricopeptide repeat(TPR)-containing protein [Oryza sativa Japonica Group] 11 Supplemental Data 2
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R.WNVSASGAR.P + Deamidated (NQ)948.4052 gi|110739787Pollen-specific protein [Arabidopsis thaliana]12 Supplemental Data 2
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R.WNVSASGARPNPQGSFR.Y + Deamidated (NQ) 1831.9080 gi|357476949Monocopper oxidase-like protein SKU5 [Medicago truncatula] 13 Supplemental Data 2
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K.FPGPTINSTTNNNVVINVR.N + Deamidated (NQ) 2057.887 Cotton_D_gene_10024265Predicted protein [Populus trichocarpa] Monocopper oxidase-like protein SKU5 14
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R.SANGNITPYLGNR.T + Deamidated (NQ) 1377.6601 gi|133902314Putative protein disulfide isomerase [Gossypium hirsutum] 15 Supplemental Data 2
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R.DEIGNISSSHLR.T + Deamidated (NQ) 1328.6318 gi|118488320Unknown [Populus trichocarpa] PREDICTED: Dolichyl-diphosphooligosaccharide- -protein glycosyltransferase subunit 1 16 Supplemental Data 2
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R.VPVGPTSGRTNDSAWR.A + Deamidated (NQ) 1700.8705 gi|42409419Hypothetical protein [Oryza sativa Japonica Group] 17 Supplemental Data 2
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T.AEGNQVNVTTGVVNATVENSVFSDR.R + 2 Deamidated (NQ) 2609.4349 gi|157273646Fasciclin-like arabinogalactan protein 6 [Gossypium hirsutum] 18 Supplemental Data 2
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A.YDPLDPNGNVTIK.W + Deamidated (NQ) 1446.8152 gi|255636649Unknown [Glycine max] COBRA-like protein 4-like19 Supplemental Data 2
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T.YNGTNHLIK.K + Deamidated (NQ) 1060.6245 gi|15223517 Calreticulin-1 [Arabidopsis thaliana] 20 Supplemental Data 2
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K.CNGTKDSISK.L + Deamidated (NQ) 1110.4172 gi|116787210Unknown [Picea sitchensis] Triosephosphate isomerase 21 Supplemental Data 2
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Q.YGIDKDFSNESR.H + Deamidated (NQ) 1431.7726 gi|326523407Predicted protein [Hordeum vulgare subsp. vulgare] Hypoxia up-regulated protein 1-like 22 Supplemental Data 2
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Y.TFTAAELSNR.T + Deamidated (NQ) 1110.5915 Cotton_D_gene_10038147Predicted protein [Populus trichocarpa] Dessication related protein 23
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Supplemental Data 2 R.GVDEALNETVCVLDDCR.G + Deamidated (NQ)+ Carbamidomethylation 1965.7318 Cotton_D_gene_10008412Lysosomal alpha mannosidase24
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Supplemental Data 2 K.ATVDGQNISFLEAAR.S + Deamidated (NQ) 1592.6866 Cotton_D_gene_10002405N-Carbamoyl-L-amino acid hydrolase-like [Vitis vinifera] 25
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Supplemental Data 2 R.YHAHQYTNGTQCDLTNQPR.E + Deamidated (NQ)+ Carbamidomethylation 2304.8245 Cotton_D_gene_10022550Conserved hypothetical protein [Ricinus communis] 26
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Supplemental Data 2 K.TPVNISDAAHVR.K + Deamidated (NQ) 1280.624 Cotton_D_gene_10005734Predicted :glucosidase 2 subunit beta like [Vitis vinifera] 27
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Supplemental Data 2 K.YNSTLSILR.L + Deamidated (NQ) 1067.5916 Cotton_D_gene_10001623Epidermis specific secreted glycoprotein EP1-like [Gossypium hirsutum] 28
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Supplemental Data 2 K.GGKFPLNVT.A+ Deamidated (NQ) 933.5058 Cotton_D_gene_10004214Fasciclin like arabinogalactan protein 6 [Gossypium hirsutum] 29
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Supplemental Data 2 K.EANVSGVPVVR.L+ Deamidated (NQ) 1127.566 Cotton_D_gene_10032854Radial Swelling 3, glucosidase/hydrolase [Arabidopsis thaliana] 30
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Supplemental Data 2 K.NVTQHITSNNVNIR.Y+ Deamidated (NQ) 1610.7202 Cotton_D_gene_10016755Predicted: hypothetical protein [Vitis vinifera] glucan endo-1,3-beta-glucosidase 8 31
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Supplemental Data 2 K.VLNLSSNQLSGDLPSSLR.S+ Deamidated (NQ) 1900.8851 Cotton_D_gene_10007821Probable inactive receptor kinase [Vitis vinifera]32
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Supplemental Data 2 R.NNSLTGALPPLLVTSPR.L+ Deamidated (NQ) 1750.9243 Cotton_D_gene_10007821Probable inactive receptor kinase [Vitis vinifera]32
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Supplemental Data 2 K.STQVANQLLGQLNNSNNGMTVFAPTDNAFSSLK.S + Deamidated (NQ) 3482.7322 gi|30841338Arabinogalactan protein [Gossypium hirsutum]33
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Supplemental Data 2 R.TQAGDSGDGKFPLNITTSGN.S + Deamidated (NQ) 1980.9635 gi|30841338Arabinogalactan protein [Gossypium hirsutum]33
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Supplemental Data 2 K.KPSLSNLTNDQLK.S + Deamidated (NQ) 1458.8081 gi|157273638Fasciclin-like arabinogalactan protein 2 [Gossypium hirsutum]34
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Supplemental Data 2 K.VLDTFQNQANNTDQGITIFVPK.D + Deamidated (NQ) 2464.2792 gi|157273638Fasciclin-like arabinogalactan protein 2 [Gossypium hirsutum]34
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Supplemental Data 2 K.ALTKPSLSNLTDDQFK.S + Deamidated (NQ) 1778.9685 gi|606942Unknown [Gossypium hirsutum] Fascilin Like Arabinogalactan protein 3 35
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Supplemental Data 2 Q.IQANNTVEGITIFVPK.D + Deamidated (NQ) 1744.9679 gi|606942Unknown [Gossypium hirsutum] Fascilin Like Arabinogalactan protein 3 35
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Supplemental Data 2 K.GDSMNLTIPEPGPTTIR.N + Deamidated (NQ); Oxidation (M) 1815.9306 gi|70927645Endo-alpha-1,4-glucanase [Gossypium hirsutum]36
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Supplemental Data 2 K.SNNFSCAIVVVGEHPYVETK.G + Deamidated (NQ) 2251.1009 gi|70927645Endo-alpha-1,4-glucanase [Gossypium hirsutum]36
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Supplemental Data 2 R.ITYPPHANYTY.S + Deamidated (NQ) 1340.6237 gi|70927645Endo-alpha-1,4-glucanase [Gossypium hirsutum]36
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Supplemental Data 2 K.VDNITSILEK.G + Deamidated (NQ) 1132.6194 gi|157273646 Fasciclin-like arabinogalactan protein 6 [Gossypium hirsutum] 37
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Supplemental Data 2 K.FPLNVTAEGNQVNVTTGVVNATVENSVFSDR.R + 3 Deamidated (NQ) 3281.3277 gi|157273646 Fasciclin-like arabinogalactan protein 6 [Gossypium hirsutum] 37
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Supplemental Data 2 K.TVTVNDFVYSGLAATGNTSNLIK.A + Deamidated (NQ) 2386.2452 gi|119657105 GLP3 [Gossypium barbadense] 38
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Supplemental Data 2 R.EYQNTGPGANTSSR.V + Deamidated (NQ) 1482.6579 gi|377824751 Pectin methylesterase [Gossypium hirsutum] 39
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Supplemental Data 2 K.GYSVITNISEAQTYTAR.N + Deamidated (NQ) 1874.9058 gi|377824751 Pectin methylesterase [Gossypium hirsutum] 39
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Supplemental Data 2 R.DVVPLNVTR.H + Deamidated (NQ) 1013.5810 gi|319433443 Copper binding protein 4 [Gossypium hirsutum] 40
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Supplemental Data 2 K.TDYESCNADHPLHNWTTGAGR.D + Deamidated (NQ) 2403.0439 gi|319433443 Copper binding protein 4 [Gossypium hirsutum] 40
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Supplemental Data 2 R.SVLYDNK.T + Deamidated (NQ) 839.4473 gi|310722811 vacuolar invertase 1 [Gossypium hirsutum] 41
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Supplemental Data 2 R.LFLFNNASGVNVK.A + Deamidated (NQ) 1423.7399 gi|310722811 vacuolar invertase 1 [Gossypium hirsutum] 41
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Supplemental Data 2 R.ACCGGGGPYNFNISAR.C + Deamidated (NQ) 1701.7330 gi|356555408 PREDICTED: GDSL esterase/lipase At5g45910-like [Glycine max] 42
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Supplemental Data 2 K.YYYEVGIGNSSR.R + Deamidated (NQ) 1408.6678 gi|357601486 PAP1 [Gossypium hirsutum] 43
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Supplemental Data 2 K.YFNYTSGFIH.H + Deamidated (NQ) 1249.5434 gi|357601486 PAP1 [Gossypium hirsutum] 43
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Supplemental Data 2 R.TQAGDSGDGEFPLNVTTSGNTVVLK.T + Deamidated (NQ) 2508.2466 gi|150416577 Arabinogalactan protein 4 [Gossypium hirsutum] 44
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Supplemental Data 2 K.VFNASGLR.K + Deamidated (NQ) 864.4829 gi|356565586 PREDICTED: PI-PLC X domain-containing protein At5g67130-like [Glycine max] 45
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Supplemental Data 2 R.EASYGHSTLEIKNR.T + Deamidated (NQ) 1605.8077 gi|21464654 Acid phosphatase [Lupinus luteus] 46
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Supplemental Data 2 R.HLPNLNGTIQPAIAK.L + Deamidated (NQ) 1587.8790 gi|33469564 Polygalacturonase-inhibiting protein [Gossypium barbadense] 47
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Supplemental Data 2 K.CHLNVSNTR.D + Deamidated (NQ) 1101.5469 gi|118485725 Unknown [Populus trichocarpa] 48
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Supplemental Data 2 K.METSVINGTYR.G + Deamidated (NQ); Oxidation (M) 1287.6395 gi|224071567 Predicted protein [Populus trichocarpa] 49
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Supplemental Data 2 R.DGGNVSDITFSNINISTR.Y + 2 Deamidated (NQ) 1911.9479 gi|224137954 Predicted protein [Populus trichocarpa] 50
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Supplemental Data 2 Q.TVQLYTDQTGANISR.N + Deamidated (NQ) 1667.8728 gi|116784836 Unknown [Picea sitchensis] 51
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Supplemental Data 2 S.IKSNGEAIGAWNYTNAESFIR.F + Deamidated (NQ)2342.1635 gi|30692673 Heparanase-like protein 3 [Arabidopsis thaliana] 52
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Supplemental Data 2 D.SFPPSQAFFNR.S + Deamidated (NQ)1298.6176 gi|224065148 Predicted protein [Populus trichocarpa] Glucan endo-1,3-beta-glucosidase 53
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Supplemental Data 2 R.TQAGQDFGLNVTGLNNQVNVSSGVVETQINNALYQK.K + Deamidated (NQ) 3822.697 gi|150416583 fasciclin-like arabinogalactan protein 1 [Gossypium hirsutum] 54
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Supplemental Data 2 R.TQAGQDFGLNVTGLNNQVNVSSGVVETQINNALYQK.K + Deamidated (NQ) 3823.6704 gi|150416583 fasciclin-like arabinogalactan protein 1 [Gossypium hirsutum] 54
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Supplemental Data 2 1564.7441 gi|102139937 Serine carboxypeptidase, putative [Musa acuminata] 55 R.QYAGYVTVNESHGR.A+ Deamidated (NQ)
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Supplemental Data 2 R.FFTESSGATLLNATLQK.D + Deamidated (NQ) 1828.9166 Cotton_D_gene_10033394 Alpha N-arabinofuranosidase 56
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Supplemental Data 2 R.FFTESSGATLLNATLQK.D + Deamidated (NQ) 2471.1626 Cotton_D_gene_10014527 Predicted protein [Populus trichocarpa] Reticuline oxidase precursor 57
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Supplemental Data 2 R.YNVSSGER.Y + Deamidated (NQ)912.3548 Cotton_D_gene_10016522 Purple acid phosphatase 58
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Supplemental Data 2 R.EASYGHSTLEIQNR.T + Deamidated (NQ) 1605.8077 Cotton_D_gene_10016522 Purple acid phosphatase 58
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Supplemental Data 2 K.IGPGISNITTIDEAER.I + Deamidated (NQ) 1686.8928 Cotton_D_gene_10006598 Protein disulfide isomerase 59
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Supplemental Data 2 K.AEVAAAIKNETR.I + Deamidated (NQ)1273.6945 Cotton_D_gene_10018695 Peroxidase 1 [Litchi chinensis] 60
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Supplemental Data 2 R.SHIYNDSNIDPSFANSLR.R + Deamidated (NQ) 2051.0088 Cotton_D_gene_10018695 Peroxidase 1 [Litchi chinensis] 60
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Supplemental Data 2 R.SGNDSVLAPLDR.Q + Deamidated (NQ)1244.6280 Cotton_D_gene_10018695 Peroxidase 1 [Litchi chinensis] 60
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Supplemental Data 2 R.VNDFIAAALAQANVTR.T + Deamidated (NQ) 1674.8328 Cotton_D_gene_10026954 Predicted protein [Populus trichocarpa] alpha-mannosidase 61
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Supplemental Data 2 R.ASLNLTILK.K + Deamidated (NQ)973.6125 Cotton_D_gene_10003411 Unknown [Populus trichocarpa] GPI anchored glycoprotein membrane precursor 62
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Supplemental Data 2 K.NQPCTNSTGANTVPGTEPQFANYPN LLAK.C + Deamidated (NQ) 3105.4327 Cotton_D_gene_10003411 Unknown [Populus trichocarpa] GPI anchored glycoprotein membrane precursor 62
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Supplemental Data 2 N.DVINSTVQPYTFTAAELSNR.T + Deamidated (NQ) 2228.0731 Cotton_D_gene_10038147 Predicted protein [Populus trichocarpa] Dessication related protein 63
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Supplemental Data 2 K.AEGLIVPLQLGAENR.T + Deamidated (NQ) 1580.7849 Cotton_D_gene_10038147 Predicted protein [Populus trichocarpa] Dessication related protein 63
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Supplemental Data 2 S.MVFGTGNATMPGGLFPR.G + Deamidated (NQ) 1785.8795 Cotton_D_gene_10038147 Predicted protein [Populus trichocarpa] Dessication related protein 63
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Supplemental Data 2 R.VNDFVAAAIAQANITR.T+ Deamidated (NQ) 1674.8120 Cotton_D_gene_1008412 Lysosomal alpha-mannosidase 64
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Supplemental Data 2 K.VIDTFQNQANNTDQGITVFVPK.D + Deamidated (NQ) 2450.2419 Cotton_D_gene_10023812 Fasciclin –like arabinogalactan protein 2 [Gossypium hirsutum] 65
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Supplemental Data 2 K.GEFNGSSISVLSR.N+ Deamidated (NQ)1353.6686 Cotton_D_gene_10025549 Disease resistance responsive family [Arabidopsis thaliana] 66
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Supplemental Data 2 K.VTDNPADELVAALNANR.T+ Deamidated (NQ) 1783.8048 Cotton_D_gene_10037278 Conserved hypothetical protein [Ricinus communis] 67
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Supplemental Data 2 K.AGLLNESAIDK.A+ Deamidated (NQ)1131.6030 Cotton_D_gene_10029587 Beta-xylosidase [Vitis vinifera] 68
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Supplemental Data 2 R.TQAGDSGDGKFPLNVTTSGN.S+ Deamidated (NQ) 1966.9382 Cotton_D_gene_10015846 Arabinogalactan protein 2 [Gossypium hirsutum] 69
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Supplemental Data 2 C.NLYNDPNTLASFNVTVPEALR.I+ Deamidated (NQ) 2349.1935 Cotton_D_gene_10009564 Lipid binding protein, putative [Ricinus communis] 70
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Supplemental Data 2 N.LLTNSSANGTSPTADCCNSLK.T+ Deamidated (NQ) 2213.0205 Cotton_D_gene_10005290 Lipid binding protein, putative [Ricinus communis] 71
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Supplemental Data 2 K.TVQLYTDQTGANISR.S+ Deamidated (NQ) 1667.8728 Cotton_D_gene_10030668 Exordium like protein [Arabidopsis thaliana] 72
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Supplemental Data 2 G.GSAVGAWNYTNAESFIR.Y+ Deamidated (NQ) 1843.6965 Cotton_D_gene_10016528 Predicted: heparanase-like protein 3-like [Vitis vinefera] 73
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Supplemental Data 2 G.GSAVGAWNYTNAESFIR.Y+ Deamidated (NQ) 1578.8358 Cotton_D_gene_10039675 Apoplastic anionic gaiacol peroxidase [Gossypium hirsutum] 74
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